Updated on 2026/04/04

写真b

 
FUJIMOTO,YUJI
 
*Items subject to periodic update by Rikkyo University (The rest are reprinted from information registered on researchmap.)
Affiliation*
College of Science Department of Life Science
Title*
Assistant Professor
Research Interests
  • plant RNA virus, small RNA, secondary siRNA

  • Campus Career*
    • 4 2025 - Present 
      College of Science   Department of Life Science   Assistant Professor
     

    Research Areas

    • Environmental Science/Agriculture Science / Conservation science (plants)  / plant RNA virus, RNA silencing

    Research History

    • 4 2025 - Present 
      Rikkyo University   College of Science

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    • 4 2022 - 3 2025 
      Rikkyo University   College of Science Department of Life Science

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    • 4 2019 - 3 2022 
      The University of Tokyo   Graduate School of Agricultural and Life Sciences Agricultural and Environmental Biology

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    Education

    • 4 2017 - 3 2022 
      The University of Tokyo   Graduate School of Agricultural and Life Sciences   Agricultural and Environmental Biology

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    • 4 2013 - 4 2017 
      The University of Tokyo

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    Papers

    • Broadening Virus Resistance Through Gene Pyramiding of <i>eIF4E</i> Family Members

      Masato Suzuki, Masanobu Nishikawa, Toya Yamamoto, Hiroaki Koinuma, Takuya Keima, Yuji Fujimoto, Ken Komatsu, Masayoshi Hashimoto, Yutaro Neriya, Kensaku Maejima, Shigetou Namba, Yasuyuki Yamaji

      Molecular Plant Pathology26 ( 12 )   9 12 2025

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      Publishing type:Research paper (scientific journal)   Publisher:Wiley  

      ABSTRACT

      Recessive resistance, achieved through mutations in host susceptibility genes, offers an effective way for controlling plant viruses. One well‐studied gene family involved in such resistance is the eukaryotic translation initiation factor 4E ( eIF4E ) gene family, which includes eIF4E , eIFiso4E and the atypical novel cap‐binding protein ( nCBP ). Although gene pyramiding of the eIF4E family may provide a promising strategy for broadening virus resistance, it has so far been applied only to a limited set of gene combinations and target viruses. To deepen our understanding of the practicality of eIF4E family gene pyramiding, we analysed a comprehensive set of eIF4E family knockout mutants and six phylogenetically diverse viruses. Double‐gene mutant lines ncbp eif4e1 and ncbp eifiso4e exhibited resistance to five and three viruses, respectively, due to both additive resistance pyramiding and the emergence of novel resistance resulting from combined mutations. Notably, the observed resistance spectrum included the Comovirus , Tymovirus , Betacarmovirus and Tobamovirus genera, which were not previously linked to the eIF4E family. These results reveal a broader involvement of the eIF4E family in viral susceptibility, which may have previously been overlooked due to functional redundancy among the family members. On the other hand, plant growth assessment revealed a more severe penalty in the ncbp eif4e1 mutant than in the ncbp eifiso4e mutant, underscoring the need to select compatible gene combinations for resistance pyramiding. Collectively, this study highlights both the advantages and potential drawbacks of eIF4E family gene pyramiding and provides insights for the future development of crop varieties with broad‐spectrum virus resistance.

      DOI: 10.1111/mpp.70187

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    • Mechanisms that regulate the production of secondary siRNAs in plants. International journal

      Yuji Fujimoto, Hiro-Oki Iwakawa

      Journal of biochemistry174 ( 6 ) 491 - 499   26 9 2023

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      Authorship:Lead author   Language:English   Publishing type:Research paper (scientific journal)  

      Many organisms produce secondary small interfering RNAs (siRNAs) that are triggered by primary small RNAs to regulate various biological processes. Plants have evolved several types of secondary siRNA biogenesis pathways that play important roles in development, stress responses, and defense against viruses and transposons. The critical step of these pathways is the production of double-stranded RNAs by RNA-dependent RNA polymerases. This step is normally tightly regulated, but when its control is released, secondary siRNA production is initiated. In this article, we will review the recent advances in secondary siRNA production triggered by microRNAs encoded in the genome and siRNAs derived from invasive nucleic acids. In particular, we will focus on the factors, events, and RNA/DNA elements that promote or inhibit the early steps of secondary siRNA biogenesis.

      DOI: 10.1093/jb/mvad071

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    • Complete Genome Sequence of Clover Yellow Mosaic Virus Isolated from White Clover in Japan Peer-reviewed

      Masato Suzuki, Nozomu Iwabuchi, Yuji Fujimoto, Takumi Suzuki, Oki Matsumoto, Tomohiro Neil Motohashi, Akio Miyazaki, Kensaku Maejima, Shigetou Namba, Yasuyuki Yamaji

      Microbiology Resource Announcements11 ( 6 )   16 6 2022

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      Language:English   Publishing type:Research paper (scientific journal)  

      DOI: 10.1128/mra.00324-22

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    • Short 5′ Untranslated Region Enables Optimal Translation of Plant Virus Tricistronic RNA via Leaky Scanning Peer-reviewed International journal

      Yuji Fujimoto, Takuya Keima, Masayoshi Hashimoto, Yuka Hagiwara-Komoda, Naoi Hosoe, Shuko Nishida, Takamichi Nijo, Kenro Oshima, Jeanmarie Verchot, Shigetou Namba, Yasuyuki Yamaji

      Journal of Virology96 ( 7 ) e0214421   9 3 2022

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      Authorship:Lead author   Language:English   Publishing type:Research paper (scientific journal)   Publisher:American Society for Microbiology  

      Potexvirus , a group of plant viruses, infect a variety of crops, including cultivated crops. It has been thought that the three transition proteins that are essential for the cell-to-cell transfer of potexviruses are translated from two subgenomic RNAs, sgRNA1 and sgRNA2.

      DOI: 10.1128/jvi.02144-21

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    • Functional conservation of EXA1 among diverse plant species for the infection by a family of plant viruses. Peer-reviewed International journal

      Akira Yusa, Yutaro Neriya, Masayoshi Hashimoto, Tetsuya Yoshida, Yuji Fujimoto, Naoi Hosoe, Takuya Keima, Kai Tokumaru, Kensaku Maejima, Osamu Netsu, Yasuyuki Yamaji, Shigetou Namba

      Scientific reports9 ( 1 ) 5958 - 5958   11 4 2019

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      Language:English   Publishing type:Research paper (scientific journal)  

      Since the propagation of plant viruses depends on various host susceptibility factors, deficiency in them can prevent viral infection in cultivated and model plants. Recently, we identified the susceptibility factor Essential for poteXvirus Accumulation 1 (EXA1) in Arabidopsis thaliana, and revealed that EXA1-mediated resistance was effective against three potexviruses. Although EXA1 homolog genes are found in tomato and rice, little is known about which viruses depend on EXA1 for their infection capability and whether the function of EXA1 homologs in viral infection is conserved across multiple plant species, including crops. To address these questions, we generated knockdown mutants using virus-induced gene silencing in two Solanaceae species, Nicotiana benthamiana and tomato. In N. benthamiana, silencing of an EXA1 homolog significantly compromised the accumulation of potexviruses and a lolavirus, a close relative of potexviruses, whereas transient expression of EXA1 homologs from tomato and rice complemented viral infection. EXA1 dependency for potexviral infection was also conserved in tomato. These results indicate that EXA1 is necessary for effective accumulation of potexviruses and a lolavirus, and that the function of EXA1 in viral infection is conserved among diverse plant species.

      DOI: 10.1038/s41598-019-42400-w

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    • The Plant Noncanonical Antiviral Resistance Protein JAX1 Inhibits Potexviral Replication by Targeting the Viral RNA-Dependent RNA Polymerase Peer-reviewed

      Yoshida Tetsuya, Shiraishi Takuya, Hagiwara-Komoda Yuka, Komatsu Ken, Maejima Kensaku, Okano Yukari, Fujimoto Yuji, Yusa Akira, Yamaji Yasuyuki, Namba Shigetou

      JOURNAL OF VIROLOGY93 ( 3 ) e01506-18   2 2019

    • Transfection of Protoplasts Prepared from Arabidopsis thaliana Leaves for Plant Virus Research. Peer-reviewed International journal

      Naoi Hosoe, Takuya Keima, Yuji Fujimoto, Yuka Hagiwara-Komoda, Masayoshi Hashimoto, Kensaku Maejima, Shigetou Namba, Yasuyuki Yamaji

      Methods in molecular biology (Clifton, N.J.)2028   145 - 151   2019

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      Language:English   Publishing type:Research paper (scientific journal)  

      Plant viruses use numerous host factors for efficient replication of the viral genome. Protoplasts, plant cells from which cell walls are removed, are the useful system to analyze the virus translation and replication in vivo. Here, we report a protocol for preparation of protoplasts from Arabidopsis thaliana leaves and transfection of plasmids to the protoplasts. Protoplasts isolated from the loss-of-function mutant of viral host factor(s) would be helpful to analyze the function of host factors in virus infection cycles.

      DOI: 10.1007/978-1-4939-9635-3_8

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    • First report of 'Candidatus Phytoplasma pruni' infecting cassava in Japan Peer-reviewed

      Hiroaki Koinuma, Akio Miyazaki, Renya Wakaki, Yuji Fujimoto, Nozomu Iwabuchi, Takamichi Nijo, Yugo Kitazawa, Toshiro Shigaki, Kensaku Maejima, Yasuyuki Yamaji, Shigetou Namba

      JOURNAL OF GENERAL PLANT PATHOLOGY84 ( 4 ) 300 - 304   7 2018

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      Language:English   Publishing type:Research paper (scientific journal)  

      DOI: 10.1007/s10327-018-0787-2

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    • Complete Genome Sequence of Lychnis Mottle Virus Isolated in Japan Peer-reviewed

      Yuji Fujimoto, Takamichi Nijo, Naoi Hosoe, Kiyoto Watanabe, Kensaku Maejima, Yasuyuki Yamaji, Shigetou Namba

      Genome Announcements6 ( 25 )   21 6 2018

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      Authorship:Lead author   Publishing type:Research paper (scientific journal)   Publisher:American Society for Microbiology  

      ABSTRACT

      We report here the first complete genome sequence of a Japanese isolate of lychnis mottle virus (LycMoV-J). The genome segments of LycMoV-J have a unique structure in their 3′ untranslated regions, and the encoded proteins have the same structure as that of an isolate reported from South Korea.

      DOI: 10.1128/genomea.00535-18

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    • Complete genome sequence of the first isolate of hibiscus latent Singapore virus detected in Japan

      Tetsuya Yoshida, Yugo Kitazawa, Yutaro Neriya, Naoi Hosoe, Yuji Fujimoto, Yuka Hagiwara-Komoda, Kensaku Maejima, Yasuyuki Yamaji, Shigetou Namba

      Genome Announcements6 ( 7 )   1 2 2018

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      Language:English   Publishing type:Research paper (scientific journal)   Publisher:American Society for Microbiology  

      DOI: 10.1128/genomeA.00054-18

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    • Complete genome sequence of a Lily virus X isolate from Japan

      Takamichi Nijo, Yukari Okano, Masayoshi Kondo, Hiroaki Okuhara, Hiroyo Sekimura, Yuji Fujimoto, Naoi Hosoe, Kensaku Maejima, Yasuyuki Yamaji, Shigetou Namba

      Genome Announcements6 ( 4 )   1 1 2018

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      Language:English   Publishing type:Research paper (scientific journal)   Publisher:American Society for Microbiology  

      DOI: 10.1128/genomeA.01462-17

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    Misc.

    • Molecular mechanisms of secondary siRNAs biogenesis in plants

      Fujimoto Yuji, Iwakawa Hiro-oki

        95 ( 3 ) 346 - 350   25 6 2023

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    • Recessive resistance to plant viruses by the deficiency of eukaryotic translation initiation factor genes.

      FUJIMOTO Yuji, HASHIMOTO Masayoshi, YAMAJI Yasuyuki

      Uirusu70 ( 1 ) 61 - 68   2020

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      Authorship:Lead author   Language:Japanese   Publisher:The Japanese Society for Virology  

      Plant viruses, obligate parasitic pathogens, utilize a variety of host plant factors in the process of their infection due to the limited number of genes encoded in their own genomes. The genes encoding these host factors are called susceptibility genes because they are responsible for the susceptibility of plants to viruses. Plants lacking or having mutations in a susceptibility gene essential for the infection of a virus acquire resistance to the virus. Such resistance trait is called recessive resistance because of the recessive inherited characteristics. Recessive resistance is reported to account for about half of the plant viral resistance loci mapped in known cultivated crops. Eukaryotic translation initiation factor (eIF) 4E family genes are well-known susceptibility genes. Although there are many reports about eIF4E-mediated recessive resistance to plant viruses, the mechanistic insight of the resistance is still limited. Here we review focusing on studies that have elucidated the mechanism of eIF4E-mediated recessive resistance.

      DOI: 10.2222/jsv.70.61

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      Other Link: https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-19J23080/

    Presentations

    • サプレッサータンパク質による RNA サイレンシング増幅阻害活性の評価系の確立

      藤本祐司, 岩川弘宙

      令和8年度日本植物病理学会大会  27 3 2026 

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      Event date: 26 3 2026 - 28 3 2026

      Language:Japanese   Presentation type:Oral presentation (general)  

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    • Analysis of the role of the SGS3 N-terminal region in secondary siRNA production

      Yuji Fujimoto, Yuriki Sakurai, Ryosuke Kowada, Keisuke Shoji, Manabu Yoshikawa, Hiro-oki Iwakawa

      JSPP2026  13 3 2026 

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      Event date: 13 3 2026 - 15 3 2026

      Language:English   Presentation type:Oral presentation (general)  

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    • Conserved negatively charged regions in SGS3 prevent its aggregation and are essential for secondary siRNA production in plants

      Yuji Fujimoto, Yuriki Sakurai, Ryosuke Kowada, Keisuke Shoji, Manabu Yoshikawa, Hiro-oki Iwakawa

      The 26th Annual Meeting of the RNA society of Japan  9 7 2025 

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      Event date: 8 7 2025 - 10 7 2025

      Language:English   Presentation type:Poster presentation  

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    • 二次的siRNA生成におけるSGS3のN末端プリオン様ドメインの機能解析

      藤本祐司, 櫻井友理希, 庄司佳祐, 吉川学, 岩川弘宙

      第12回植物RNA研究者ネットワークシンポジウム  16 12 2024 

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      Event date: 15 12 2024 - 16 12 2024

      Language:Japanese   Presentation type:Oral presentation (general)  

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    • 植物の二次的siRNA生成におけるSGS3のN末端プリオン様ドメインの機能解析

      藤本祐司, 櫻井友理希, 庄司佳祐, 吉川学, 岩川弘宙

      第47回日本分子生物学会年会  28 11 2024 

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      Event date: 26 11 2024 - 29 11 2024

      Language:English   Presentation type:Poster presentation  

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    • Elucidation of the role of the N-terminal prion-like domain of SGS3 in plant seconadary siRNA biogeneis

      Yuji Fujimoto, Yuriki Sakurai, Keisuke Shoji, Manabu Yoshikawa, Hiro-oki Iwakawa

      The 25th Annual Meeting of the RNA Society of Japan  26 6 2024 

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      Language:English   Presentation type:Poster presentation  

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    • Translation mechanism of three movement proteins of Potexvirus

      Yuji Fujimoto, Takuya Keima, Yuka Hagiwara-Komoda, Naoi Hosoe, Shuko Nishida, Takamichi Nijo, Kenro Oshima, Jeanmarie Verchot, SHigetou Namba, Yasuyuki Yamaji

      The 70th Annual Meeting of the Japanese Society for Viriology  27 9 2023 

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      Presentation type:Oral presentation (general)  

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    • Translation mechanism of three movement proteins of Potexvirus.

      27 3 2023 

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      Event date: 27 3 2023 - 29 3 2023

      Language:Japanese   Presentation type:Oral presentation (general)  

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    • Short 5' untranslated region enables optimal translation of plant virus tricistronic RNA via leaky scanning

      Yuji Fujimoto, Takuya Keima, Masayoshi Hashimoto, Hagiwara-Komoda Yuka, Naoi Hosoe, Shuko Nishida, Takamichi Nijo, Kenro Oshima, Jeanmarie Verchot, Shigetou Namba, Yasuyuki Yamaji

      21 7 2022 

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      Event date: 20 7 2022 - 22 7 2022

      Language:English   Presentation type:Poster presentation  

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    Teaching Experience

    • 4 2025 - Present 
      Research Experiments ( Rikkyo University )

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    • 4 2025 - Present 
      Laboratory Experiments in Life Science 2A ( Rikkyo University )

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    • 4 2025 - Present 
      Basic Experiments in Life Science ( Rikkyo University )

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    • 4 2025 - Present 
      Seminar in Life Science 2 ( Rikkyo University )

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    • 1 2023 - 1 2023 
      Advanced Lectures on Life Science ( Rikkyo University )

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    Professional Memberships

    • 5 2019 - Present 
      日本RNA学会

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    • 6 2018 - Present 
      日本植物生理学会

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    • 1 2017 - Present 
      日本植物病理学会

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    Research Projects

    • 反応場の情報を統合した植物RISC形成機構の解明

      日本学術振興会  科学研究費助成事業 

      藤本 祐司

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      3 2023 - 3 2025

      Grant number:22KJ2862

      Grant amount:\5200000 ( Direct Cost: \4000000 、 Indirect Cost:\1200000 )

      2023年度は、活性の高いタバコ培養細胞抽出液を調整することができた。本抽出液を用いた無細胞系と、昨年度確立を確認できていたNicotiana benthamiana葉における一過的な発現系の両者において、二次的siRNA生成が再構成でき、さらにノーザンブロットによってこの二次的小分子RNAの蓄積を評価できることを確認した。また、後者においては、ウイルスの持つサイレンシングサプレッサータンパク質を共発現させることで、二次的小分子RNAの蓄積量が大きく低下した。サイレンシングサプレッサー活性を低下させる変異を導入したウイルスタンパク質を共発現させた場合には、二次的小分子RNAの蓄積が野生型共発現時に比べて回復していたことから、本系はウイルスタンパク質のサイレンシングサプレッサー活性を解析する上でも有用であると考えられた。
      無細胞系においては、免疫沈降法によってRISCとSGS3との相互作用を確認することができたが、SGS3をトランスに発現させた場合には安定した検出が困難であったため、今後条件検討を行うほか、ベイトとなるタンパク質や使用する抗体を変更するなどを試みる。
      受け入れ研究者である岩川弘宙博士と共同で、植物の二次的siRNA生成機構に関する総説を執筆した。既知の分子機構の概説に加え、二次的siRNA生成が何によって増幅され、どのように抑制されているのかにも言及し、ウイルスやトランスポゾンのような急速に増加するinvasive RNAに対する植物RNAサイレンシングの応答の経時的な動態モデルを、現段階での研究報告を踏まえて考察しようと試みた。

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    • Elucidation of plant RISC formation mechanism by integrating location information of reaction sites

      Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research Grant-in-Aid for JSPS Fellows 

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      4 2022 - 3 2025

      Grant number:22J01347

      Grant amount:\5200000 ( Direct Cost: \4000000 、 Indirect Cost:\1200000 )

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    • A unified understanding of the mechanism of recessive resistance to plant viruses mediated by eukaryotic translation initiation factors

      Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research Grant-in-Aid for JSPS Fellows 

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      4 2019 - 3 2022

      Grant number:19J23080

      Grant amount:\3400000 ( Direct Cost: \3400000 )

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