plant RNA virus, small RNA, secondary siRNA
-
4 2025 - PresentCollege of Science Department of Life Science Assistant Professor
Researcher Profile
Updated on 2026/04/04
plant RNA virus, small RNA, secondary siRNA
Environmental Science/Agriculture Science / Conservation science (plants) / plant RNA virus, RNA silencing
Broadening Virus Resistance Through Gene Pyramiding of <i>eIF4E</i> Family Members
Masato Suzuki, Masanobu Nishikawa, Toya Yamamoto, Hiroaki Koinuma, Takuya Keima, Yuji Fujimoto, Ken Komatsu, Masayoshi Hashimoto, Yutaro Neriya, Kensaku Maejima, Shigetou Namba, Yasuyuki Yamaji
Molecular Plant Pathology26 ( 12 ) 9 12 2025
Mechanisms that regulate the production of secondary siRNAs in plants. International journal
Yuji Fujimoto, Hiro-Oki Iwakawa
Journal of biochemistry174 ( 6 ) 491 - 499 26 9 2023
Complete Genome Sequence of Clover Yellow Mosaic Virus Isolated from White Clover in Japan Peer-reviewed
Masato Suzuki, Nozomu Iwabuchi, Yuji Fujimoto, Takumi Suzuki, Oki Matsumoto, Tomohiro Neil Motohashi, Akio Miyazaki, Kensaku Maejima, Shigetou Namba, Yasuyuki Yamaji
Microbiology Resource Announcements11 ( 6 ) 16 6 2022
Short 5′ Untranslated Region Enables Optimal Translation of Plant Virus Tricistronic RNA via Leaky Scanning Peer-reviewed International journal
Yuji Fujimoto, Takuya Keima, Masayoshi Hashimoto, Yuka Hagiwara-Komoda, Naoi Hosoe, Shuko Nishida, Takamichi Nijo, Kenro Oshima, Jeanmarie Verchot, Shigetou Namba, Yasuyuki Yamaji
Journal of Virology96 ( 7 ) e0214421 9 3 2022
Functional conservation of EXA1 among diverse plant species for the infection by a family of plant viruses. Peer-reviewed International journal
Akira Yusa, Yutaro Neriya, Masayoshi Hashimoto, Tetsuya Yoshida, Yuji Fujimoto, Naoi Hosoe, Takuya Keima, Kai Tokumaru, Kensaku Maejima, Osamu Netsu, Yasuyuki Yamaji, Shigetou Namba
Scientific reports9 ( 1 ) 5958 - 5958 11 4 2019
The Plant Noncanonical Antiviral Resistance Protein JAX1 Inhibits Potexviral Replication by Targeting the Viral RNA-Dependent RNA Polymerase Peer-reviewed
Yoshida Tetsuya, Shiraishi Takuya, Hagiwara-Komoda Yuka, Komatsu Ken, Maejima Kensaku, Okano Yukari, Fujimoto Yuji, Yusa Akira, Yamaji Yasuyuki, Namba Shigetou
JOURNAL OF VIROLOGY93 ( 3 ) e01506-18 2 2019
Transfection of Protoplasts Prepared from Arabidopsis thaliana Leaves for Plant Virus Research. Peer-reviewed International journal
Naoi Hosoe, Takuya Keima, Yuji Fujimoto, Yuka Hagiwara-Komoda, Masayoshi Hashimoto, Kensaku Maejima, Shigetou Namba, Yasuyuki Yamaji
Methods in molecular biology (Clifton, N.J.)2028 145 - 151 2019
First report of 'Candidatus Phytoplasma pruni' infecting cassava in Japan Peer-reviewed
Hiroaki Koinuma, Akio Miyazaki, Renya Wakaki, Yuji Fujimoto, Nozomu Iwabuchi, Takamichi Nijo, Yugo Kitazawa, Toshiro Shigaki, Kensaku Maejima, Yasuyuki Yamaji, Shigetou Namba
JOURNAL OF GENERAL PLANT PATHOLOGY84 ( 4 ) 300 - 304 7 2018
Complete Genome Sequence of Lychnis Mottle Virus Isolated in Japan Peer-reviewed
Yuji Fujimoto, Takamichi Nijo, Naoi Hosoe, Kiyoto Watanabe, Kensaku Maejima, Yasuyuki Yamaji, Shigetou Namba
Genome Announcements6 ( 25 ) 21 6 2018
Complete genome sequence of the first isolate of hibiscus latent Singapore virus detected in Japan
Tetsuya Yoshida, Yugo Kitazawa, Yutaro Neriya, Naoi Hosoe, Yuji Fujimoto, Yuka Hagiwara-Komoda, Kensaku Maejima, Yasuyuki Yamaji, Shigetou Namba
Genome Announcements6 ( 7 ) 1 2 2018
Complete genome sequence of a Lily virus X isolate from Japan
Takamichi Nijo, Yukari Okano, Masayoshi Kondo, Hiroaki Okuhara, Hiroyo Sekimura, Yuji Fujimoto, Naoi Hosoe, Kensaku Maejima, Yasuyuki Yamaji, Shigetou Namba
Genome Announcements6 ( 4 ) 1 1 2018
Molecular mechanisms of secondary siRNAs biogenesis in plants
Fujimoto Yuji, Iwakawa Hiro-oki
95 ( 3 ) 346 - 350 25 6 2023
FUJIMOTO Yuji, HASHIMOTO Masayoshi, YAMAJI Yasuyuki
Uirusu70 ( 1 ) 61 - 68 2020
サプレッサータンパク質による RNA サイレンシング増幅阻害活性の評価系の確立
藤本祐司, 岩川弘宙
令和8年度日本植物病理学会大会 27 3 2026
Analysis of the role of the SGS3 N-terminal region in secondary siRNA production
Yuji Fujimoto, Yuriki Sakurai, Ryosuke Kowada, Keisuke Shoji, Manabu Yoshikawa, Hiro-oki Iwakawa
JSPP2026 13 3 2026
Conserved negatively charged regions in SGS3 prevent its aggregation and are essential for secondary siRNA production in plants
Yuji Fujimoto, Yuriki Sakurai, Ryosuke Kowada, Keisuke Shoji, Manabu Yoshikawa, Hiro-oki Iwakawa
The 26th Annual Meeting of the RNA society of Japan 9 7 2025
二次的siRNA生成におけるSGS3のN末端プリオン様ドメインの機能解析
藤本祐司, 櫻井友理希, 庄司佳祐, 吉川学, 岩川弘宙
第12回植物RNA研究者ネットワークシンポジウム 16 12 2024
植物の二次的siRNA生成におけるSGS3のN末端プリオン様ドメインの機能解析
藤本祐司, 櫻井友理希, 庄司佳祐, 吉川学, 岩川弘宙
第47回日本分子生物学会年会 28 11 2024
Elucidation of the role of the N-terminal prion-like domain of SGS3 in plant seconadary siRNA biogeneis
Yuji Fujimoto, Yuriki Sakurai, Keisuke Shoji, Manabu Yoshikawa, Hiro-oki Iwakawa
The 25th Annual Meeting of the RNA Society of Japan 26 6 2024
Translation mechanism of three movement proteins of Potexvirus
Yuji Fujimoto, Takuya Keima, Yuka Hagiwara-Komoda, Naoi Hosoe, Shuko Nishida, Takamichi Nijo, Kenro Oshima, Jeanmarie Verchot, SHigetou Namba, Yasuyuki Yamaji
The 70th Annual Meeting of the Japanese Society for Viriology 27 9 2023
Translation mechanism of three movement proteins of Potexvirus.
27 3 2023
Short 5' untranslated region enables optimal translation of plant virus tricistronic RNA via leaky scanning
Yuji Fujimoto, Takuya Keima, Masayoshi Hashimoto, Hagiwara-Komoda Yuka, Naoi Hosoe, Shuko Nishida, Takamichi Nijo, Kenro Oshima, Jeanmarie Verchot, Shigetou Namba, Yasuyuki Yamaji
21 7 2022
反応場の情報を統合した植物RISC形成機構の解明
日本学術振興会 科学研究費助成事業
藤本 祐司
3 2023 - 3 2025
Grant number:22KJ2862
Grant amount:\5200000 ( Direct Cost: \4000000 、 Indirect Cost:\1200000 )
2023年度は、活性の高いタバコ培養細胞抽出液を調整することができた。本抽出液を用いた無細胞系と、昨年度確立を確認できていたNicotiana benthamiana葉における一過的な発現系の両者において、二次的siRNA生成が再構成でき、さらにノーザンブロットによってこの二次的小分子RNAの蓄積を評価できることを確認した。また、後者においては、ウイルスの持つサイレンシングサプレッサータンパク質を共発現させることで、二次的小分子RNAの蓄積量が大きく低下した。サイレンシングサプレッサー活性を低下させる変異を導入したウイルスタンパク質を共発現させた場合には、二次的小分子RNAの蓄積が野生型共発現時に比べて回復していたことから、本系はウイルスタンパク質のサイレンシングサプレッサー活性を解析する上でも有用であると考えられた。
無細胞系においては、免疫沈降法によってRISCとSGS3との相互作用を確認することができたが、SGS3をトランスに発現させた場合には安定した検出が困難であったため、今後条件検討を行うほか、ベイトとなるタンパク質や使用する抗体を変更するなどを試みる。
受け入れ研究者である岩川弘宙博士と共同で、植物の二次的siRNA生成機構に関する総説を執筆した。既知の分子機構の概説に加え、二次的siRNA生成が何によって増幅され、どのように抑制されているのかにも言及し、ウイルスやトランスポゾンのような急速に増加するinvasive RNAに対する植物RNAサイレンシングの応答の経時的な動態モデルを、現段階での研究報告を踏まえて考察しようと試みた。
Elucidation of plant RISC formation mechanism by integrating location information of reaction sites
Japan Society for the Promotion of Science Grants-in-Aid for Scientific Research Grant-in-Aid for JSPS Fellows
4 2022 - 3 2025
Grant number:22J01347
Grant amount:\5200000 ( Direct Cost: \4000000 、 Indirect Cost:\1200000 )
A unified understanding of the mechanism of recessive resistance to plant viruses mediated by eukaryotic translation initiation factors
Japan Society for the Promotion of Science Grants-in-Aid for Scientific Research Grant-in-Aid for JSPS Fellows