-
Septal wall synthesis is sufficient to change ameba-like cells into uniform oval-shaped cells in Escherichia coli L-forms.
Peer-reviewed
International journal
Masafumi Hayashi, Chigusa Takaoka, Koichi Higashi, Ken Kurokawa, William Margolin, Taku Oshima, Daisuke Shiomi
Communications biology7
(
1
)
1569
26 11 2024
-
FtsZ of wall-less bacteria forms ring-like structures
Taishi Kasai, Yohei O Tahara, Makoto Miyata, Daisuke Shiomi
bioRxiv
16 10 2024
-
細菌の新奇生存戦略:L-form 細胞壁が有っても無くても細菌は生きられる
塩見大輔, 林匡史, 大島拓
化学と生物62
(
1
)
1 1 2024
-
Relationship between the Rod complex and peptidoglycan structure in Escherichia coli
Peer-reviewed
Risa Ago, Yuhei O. Tahara, Honoka Yamaguchi, Motoya Saito, Wakana Ito, Kaito Yamasaki, Taishi Kasai, Sho Okamoto, Taiki Chikada, Taku Oshima, Issey Osaka, Makoto Miyata, Hironori Niki, Daisuke Shiomi
MicrobiologyOpen12
(
5
)
9 10 2023
-
D-amino Acids Ameliorate Experimental Colitis and Cholangitis by Inhibiting Growth of Proteobacteria: Potential Therapeutic Role in Inflammatory Bowel Disease.
Peer-reviewed
International journal
Satoko Umeda, Tomohisa Sujino, Kentaro Miyamoto, Yusuke Yoshimatsu, Yosuke Harada, Keita Nishiyama, Yoshimasa Aoto, Keika Adachi, Naoki Hayashi, Kimiko Amafuji, Nobuko Moritoki, Shinsuke Shibata, Nobuo Sasaki, Masashi Mita, Shun Tanemoto, Keiko Ono, Yohei Mikami, Jumpei Sasabe, Kaoru Takabayashi, Naoki Hosoe, Toshihiko Suzuki, Toshiro Sato, Koji Atarashi, Toshiaki Teratani, Haruhiko Ogata, Nobuhiro Nakamoto, Daisuke Shiomi, Hiroshi Ashida, Takanori Kanai
Cellular and molecular gastroenterology and hepatology
9 8 2023
-
Outer Membrane is Critical for Viability of Cell Wall-deficient Bacterial Cells, L-form
Invited
Peer-reviewed
Daisuke SHIOMI, Taku OSHIMA
Seibutsu Butsuri63
(
1
)
27
-
29
1 2023
-
壁をなくしてみたところ
Invited
Peer-reviewed
大島 拓, 塩見 大輔
生物工学会誌100
(
3
)
137
-
137
3 2022
-
Direct Observation of Conversion From Walled Cells to Wall-Deficient L-Form and Vice Versa in Escherichia coli Indicates the Essentiality of the Outer Membrane for Proliferation of L-Form Cells.
Peer-reviewed
International journal
Taiki Chikada, Tomomi Kanai, Masafumi Hayashi, Taishi Kasai, Taku Oshima, Daisuke Shiomi
Frontiers in microbiology12
645965
-
645965
3 2021
-
Alteration of Membrane Fluidity or Phospholipid Composition Perturbs Rotation of MreB Complexes in Escherichia coli.
Peer-reviewed
International journal
Keisuke Kurita, Fumiya Kato, Daisuke Shiomi
Frontiers in molecular biosciences7
582660
-
582660
2020
-
RodZ: A key-player in cell elongation and cell division in Escherichia coli
Invited
Peer-reviewed
International journal
Risa Ago, Daisuke Shiomi
AIMS Microbiology5
(
4
)
358
-
367
11 2019
-
Division-site localization of RodZ is required for efficient Z ring formation in Escherichia coli.
Peer-reviewed
International journal
Yoshii Y, Niki H, Shiomi D
Molecular microbiology111
(
5
)
1229
-
1244
5 2019
-
Relation between rotation of MreB actin and cell width of Escherichia coli.
Peer-reviewed
International journal
Kurita K, Shin R, Tabei T, Shiomi D
Genes to cells : devoted to molecular & cellular mechanisms24
(
3
)
259
-
265
3 2019
-
Regulations of Subcellular Localization and Functions of MreB Actin in Escherichia coli
栗田恵輔, 塩見大輔
生物物理(Web)59
(
2
)
100‐102(J‐STAGE)
2019
-
The periplasmic disordered domain of RodZ promotes its self-interaction in Escherichia coli
Peer-reviewed
International journal
Ryosuke Ikebe, Yuri Kuwabara, Taiki Chikada, Hironori Niki, Daisuke Shiomi
Genes to Cells23
(
4
)
307
-
317
1 4 2018
-
Erratum: Author Correction: ARC6-mediated Z ring-like structure formation of prokaryote-descended chloroplast FtsZ in Escherichia coli (Scientific reports (2017) 7 1 (3492))
Hiroki Irieda, Daisuke Shiomi
Scientific reports8
(
1
)
4876
15 3 2018
-
Bacterial heterologous expression system for reconstitution of chloroplast inner division ring and evaluation of its contributors
Peer-reviewed
International journal
Hiroki Irieda, Daisuke Shiomi
International Journal of Molecular Sciences19
(
2
)
11 2 2018
-
Polar localization of MreB actin is inhibited by anionic phospholipids in the rod-shaped bacterium Escherichia coli (vol 63, pg 849, 2017)
Invited
Peer-reviewed
Daisuke Shiomi
CURRENT GENETICS63
(
5
)
845
-
848
10 2017
-
ARC6-mediated Z ring-like structure formation of prokaryote-descended chloroplast FtsZ in Escherichia coli
Peer-reviewed
Hiroki Irieda, Daisuke Shiomi
SCIENTIFIC REPORTS7
(
1
)
3492
6 2017
-
Exclusion of assembled MreB by anionic phospholipids at cell poles confers cell polarity for bidirectional growth
Peer-reviewed
Takuma Kawazura, Kanon Matsumoto, Koki Kojima, Fumiya Kato, Tomomi Kanai, Hironori Niki, Daisuke Shiomi
MOLECULAR MICROBIOLOGY104
(
3
)
472
-
486
5 2017
-
Rapid, precise quantification of bacterial cellular dimensions across a genomic-scale knockout library
Peer-reviewed
Tristan Ursell, Timothy K. Lee, Daisuke Shiomi, Handuo Shi, Carolina Tropini, Russell D. Monds, Alexandre Colavin, Gabriel Billings, Ilina Bhaya-Grossman, Michael Broxton, Bevan Emma Huang, Hironori Niki, Kerwyn Casey Huang
BMC BIOLOGY15
(
1
)
17
2 2017
-
Regulation of bacterial cell shape revealed by single cell observations
Invited
Daisuke Shiomi
Microscopy65
i9
-
i9
2016
-
[Regulation of determination of bacterial shape].
Peer-reviewed
Shiomi D
Nihon saikingaku zasshi. Japanese journal of bacteriology69
(
4
)
557
-
564
2014
-
A mutation in the promoter region of zipA, a component of the divisome, suppresses the shape defect of RodZ-deficient cells
Peer-reviewed
Daisuke Shiomi, Hironori Niki
MICROBIOLOGYOPEN2
(
5
)
798
-
810
10 2013
-
Mutations in cell elongation genes mreB, mrdA and mrdB suppress the shape defect of RodZ-deficient cells
Peer-reviewed
Daisuke Shiomi, Atsushi Toyoda, Tomoyuki Aizu, Fumio Ejima, Asao Fujiyama, Tadasu Shini, Yuji Kohara, Hironori Niki
MOLECULAR MICROBIOLOGY87
(
5
)
1029
-
1044
3 2013
-
A mutation of ispA that is involved in isoprenoid biogenesis can improve growth of Escherichia coli at low temperatures
Peer-reviewed
Daisuke Shiomi, Hironori Niki
MICROBIOLOGY AND IMMUNOLOGY55
(
12
)
885
-
888
12 2011
-
Visualization of bacteriophage P1 infection by cryo-electron tomography of tiny Escherichia coli
Peer-reviewed
Jun Liu, Cheng-Yen Chen, Daisuke Shiomi, Hironori Niki, William Margolin
VIROLOGY417
(
2
)
304
-
311
9 2011
-
Identification of Escherichia coli ZapC (YcbW) as a Component of the Division Apparatus That Binds and Bundles FtsZ Polymers
Peer-reviewed
Cynthia A. Hale, Daisuke Shiomi, Bing Liu, Thomas G. Bernhardt, William Margolin, Hironori Niki, Piet A. J. de Boer
JOURNAL OF BACTERIOLOGY193
(
6
)
1393
-
1404
3 2011
-
Mechanism of rod-shape formation by cytoskeletal proteins in Escherichia coli
SHIOMI Daisuke, NIKI Hironori
Biseibutsu seitai24
(
2
)
51
-
60
1 9 2009
-
Genetic mechanism regulating bacterial cell shape and metabolism.
Shiomi D, Mori H, Niki H
5 2009
-
Genetic mechanism regulating bacterial cell shape and metabolism
Daisuke Shiomi, Hideo Mori, Hironori Niki
Communicative and Integrative Biology2
(
3
)
219
-
220
5 2009
-
Determination of bacterial rod shape by a novel cytoskeletal membrane protein
Peer-reviewed
Daisuke Shiomi, Masako Sakai, Hironori Niki
EMBO JOURNAL27
(
23
)
3081
-
3091
12 2008
-
Compensation for the loss of the conserved membrane targeting sequence of FtsA provides new insights into its function
Peer-reviewed
Daisuke Shiomi, William Margolin
MOLECULAR MICROBIOLOGY67
(
3
)
558
-
569
2 2008
-
大腸菌におけるタンパク質の細胞内局在とそのメカニズム
塩見大輔
生化学80
(
1
)
36
-
40
25 1 2008
-
Mechanisms Underlying Subcellular Localization of the Bacterial Transmembrane Chemoreceptor
SHIOMI Daisuke, KAWAGISHI Ikuro
Biophysics48
(
1
)
30
-
34
25 1 2008
-
[Mechanism underlying subcellular localization of proteins in Escherichia coli].
Peer-reviewed
Shiomi D
Seikagaku. The Journal of Japanese Biochemical Society80
36
-
40
1 2008
-
Dimerization or oligomerization of the actin-like FtsA protein enhances the integrity of the cytokinetic Z ring
Peer-reviewed
Daisuke Shiomi, William Margolin
MOLECULAR MICROBIOLOGY66
(
6
)
1396
-
1415
12 2007
-
A sweet sensor for size-conscious bacteria
Peer-reviewed
Daisuke Shiomi, William Margolin
CELL130
(
2
)
216
-
218
7 2007
-
An altered FtsA can compensate for the loss of essential cell division protein FtsN in Escherichia coli
Peer-reviewed
Christophe S. Bernard, Mahalakshmi Sadasivam, Daisuke Shiomi, William Margolin
MOLECULAR MICROBIOLOGY64
(
5
)
1289
-
1305
6 2007
-
The ftsA* gain-of-function allele of Escherichia coli and its effects on the stability and dynamics of the Z ring
Peer-reviewed
Brett Geissler, Daisuke Shiomi, William Margolin
MICROBIOLOGY-SGM153
(
3
)
814
-
825
3 2007
-
The C-terminal domain of MinC inhibits assembly of the Z ring in Escherichia coli
Peer-reviewed
Daisuke Shiomi, William Margolin
JOURNAL OF BACTERIOLOGY189
(
1
)
236
-
243
1 2007
-
Helical distribution of the bacterial chemoreceptor via colocalization with the Sec protein translocation machinery
Peer-reviewed
D Shiomi, M Yoshimoto, M Homma, Kawagishi, I
MOLECULAR MICROBIOLOGY60
(
4
)
894
-
906
5 2006
-
2P547 Single cell based analysis on the polarity of Escherichia coli cells(52. Bio-imaging,Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)
Ayano Satoru, Inoue Ippei, Shiomi Daisuke, Kawagishi Ikuro, Yasuda Kenji
Seibutsu Butsuri46
(
2
)
S432
2006
-
Stabilization of polar localization of a chemoreceptor via its covalent modifications and its communication with a different chemoreceptor
Peer-reviewed
D Shiomi, S Banno, M Homma, Kawagishi, I
JOURNAL OF BACTERIOLOGY187
(
22
)
7647
-
7654
11 2005
-
Subcellular localization of histidine kinases in Escherichia coli
Yoshimoto M., Shiomi D., Homma M., Kawagishi I.
Seibutsu Butsuri45
S260
2005
-
2P228 Subcellular localization and clustering of the redox sensor Aer of Escherichia coli
Ohta N., Banno S., Obata Y., Shiomi D., Homma M., Kawagishi
Seibutsu Butsuri45
S176
2005
-
3P348 Single-cell analysis of E.coli's polarity
Ayano S., Inoue I., Shiomi D., Kawagishi I., Yasuda K.
Seibutsu Butsuri45
S290
2005
-
Targeting of the chemotaxis methylesterase/deamidase CheB to the polar receptor-kinase cluster in an Escherichia coli cell
Peer-reviewed
S Banno, D Shiomi, M Homma, Kawagishi, I
MOLECULAR MICROBIOLOGY53
(
4
)
1051
-
1063
8 2004
-
Simultaneous measurement of sensor-protein dynamics and motility of a single cell by on-chip microcultivation system.
Peer-reviewed
International journal
Ippei Inoue, Daisuke Shiomi, Ikuro Kawagishi, Kenji Yasuda
Journal of nanobiotechnology2
(
1
)
4
-
4
30 4 2004
-
Attractant binding alters arrangement of chemoreceptor dimers within its cluster at a cell pole
Peer-reviewed
M Homma, D Shiomi, M Homma, Kawagishi, I
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA101
(
10
)
3462
-
3467
3 2004
-
3P213 Simultaneous measurement of dynamics of sensor-protein localization and motility behavior in individual Escherichia coli cells
Inoue I., Shiomi D., Kawagishi I., Yasuda K.
Seibutsu Butsuri44
S243
2004
-
2P144 Subcellular localization of the redox sensor Aer of Escherichia coli and its interaction with the chemoreceptor
Obata Y., Shiomi D., Homma M., Kawagishi I.
Seibutsu Butsuri44
S145
2004
-
2P142 Polar and helical localization of the chemoreceptor in an Escherichia coli cell
Yoshimoto M., Shiomi D., Homma M., Kawagishi I.
Seibutsu Butsuri44
S145
2004
-
2P143 Negative feedback through the localization control of the receptor methylesterase CheB in the bacterial chemotaxis
Banno S., Shiomi D., Homma M., Kawagishi I.
Seibutsu Butsuri44
S145
2004
-
Measurement of sensor-protein dynamics in bacterial cytoplasm by use of the on-chip single cell observation system.
Inoue I., Wakamoto Y., Shiomi D., Kawagishi I., Yasuda K.
Seibutsu Butsuri43
S243
2003
-
Mechanism of targeting of the bacterial chemoreceptor to a cell pole.
Shiomi D., Yoshimoto M., Irieda H., Homma M., Kawagishi I.
Seibutsu Butsuri43
S106
2003
-
Does the aspartate chemoreceptor Tar amplify signals through its interdimer interaction?
Homma M., Shiomi D., Homma M., Kawagishi I.
Seibutsu Butsuri43
S180
2003
-
Subcellular localization of the Aer in redox taxis of Escherichia coli.
Obata Y., Shiomi D., Homma M., Kawagishi I.
Seibutsu Butsuri43
S153
2003
-
The recognition of the chemotactic receptor-kinase complex by the methylesterase CheB.
Banno S., Shiomi D., Homma M., Kawagishi I.
Seibutsu Butsuri43
S153
2003
-
Dual recognition of the bacterial chemoreceptor by chemotaxis-specific domains of the CheR methyltransferase
Peer-reviewed
D Shiomi, IB Zhulin, M Homma, Kawagishi, I
JOURNAL OF BIOLOGICAL CHEMISTRY277
(
44
)
42325
-
42333
11 2002
-
Intragenic suppressors of a mutation in the aspartate chemoreceptor gene that abolishes binding of the receptor to methyltransferase
Peer-reviewed
D Shiomi, M Homma, Kawagishi, I
MICROBIOLOGY-SGM148
3265
-
3275
10 2002
-
1C900 Regulation of the bacterial chemoreceptor-kinase complex at cell poles.
Shiomi D., Homma M., Kawagishi I.
Seibutsu Butsuri42
(
2
)
S19
2002
-
1C0915 Polar localization of the chemotactic methylesterase CheB of Escherichia coli
Banno S., Shiomi D., Homma M., Kawagishi I.
Seibutsu Butsuri42
(
2
)
S19
2002
-
1C1000 Analysis of the three homologs of the methltransferase CheR in Vibrio cholerae
Hyakutake A., Nishioka N., Shiomi D., Homma M., Kawagishi I.
Seibutsu Butsuri42
(
2
)
S20
2002
-
1C0930 Effects of the methylation and the attractant on the interdimer interaction of the chemoreceptor of Escherichia coli
Homma M., Shiomi D., Homma M., Kawagishi I.
Seibutsu Butsuri42
(
2
)
S20
2002
-
Effect of methylation of the chemoreceptor on its ligand-binding affinity and subcellular localization
Sakamoto H, Shiomi D, Iwama T, Homma M, Kawagishi I
Seibutsu Butsuri41
S138
2001
-
Subcellular localization of signaling proteins in adaptation of E.coli chemotaxis
Shiomi D, Igor Zhulin, Homma M, Kawagishi I
Seibutsu Butsuri41
S137
2001
-
The aspartate chemoreceptor Tar is effectively methylated by binding to the methyltransferase mainly through hydrophobic interaction
Peer-reviewed
D Shiomi, H Okumura, M Homma, Kawagishi, I
MOLECULAR MICROBIOLOGY36
(
1
)
132
-
140
4 2000
-
Functional analysis of the bacterial methyltransferase CheR involved in chemotactic adaptation.
Shiomi D., Zhulin Igor., Homma M., Kawagishi I.
Seibutsu Butsuri40
S89
2000
-
Interaction between the bacterial chemoreceptor Tar and the methyltransferase CheR and its role in chemotactic adaptation
Shiomi D., Furihata T., Sato K., Homma M., Kawagishi I.
Seibutsu Butsuri39
S53
1999