-
Sexual reproduction: Is the genetic pathway for female germ cell specification conserved in land plants?
Emiko Yoro, Keiko Sakakibara
Current Biology34
(
6
)
R241
-
R244
3 2024
-
Protocol: an improved method for inducing sporophyte generation in the model moss Physcomitrium patens under nitrogen starvation.
Peer-reviewed
International journal
Emiko Yoro, Shizuka Koshimizu, Takashi Murata, Keiko Sakakibara
Plant methods19
(
1
)
100
-
100
26 9 2023
-
What can hornworts teach us?
Invited
Peer-reviewed
International journal
Eftychios Frangedakis, Alan O Marron, Manuel Waller, Anna Neubauer, Sze Wai Tse, Yuling Yue, Stephanie Ruaud, Lucas Waser, Keiko Sakakibara, Péter Szövényi
Frontiers in plant science14
1108027
-
1108027
2023
-
Phylogenetic distribution and expression pattern analyses identified a divergent basal body assembly protein involved in land plant spermatogenesis
Peer-reviewed
International journal
Shizuka Koshimizu, Naoki Minamino, Tomoaki Nishiyama, Emiko Yoro, Mayuko Sato, Mayumi Wakazaki, Kiminori Toyooka, Kazuo Ebine, Keiko Sakakibara, Takashi Ueda, Kentaro Yano
New Phytologist236
(
3
)
1182
-
1196
3 8 2022
-
An ancestral function of strigolactones as symbiotic rhizosphere signals.
Peer-reviewed
International journal
Kyoichi Kodama, Mélanie K Rich, Akiyoshi Yoda, Shota Shimazaki, Xiaonan Xie, Kohki Akiyama, Yohei Mizuno, Aino Komatsu, Yi Luo, Hidemasa Suzuki, Hiromu Kameoka, Cyril Libourel, Jean Keller, Keiko Sakakibara, Tomoaki Nishiyama, Tomomi Nakagawa, Kiyoshi Mashiguchi, Kenichi Uchida, Kaori Yoneyama, Yoshikazu Tanaka, Shinjiro Yamaguchi, Masaki Shimamura, Pierre-Marc Delaux, Takahito Nomura, Junko Kyozuka
Nature communications13
(
1
)
3974
-
3974
8 7 2022
-
The complete plastid genome sequence of the enigmatic moss, Takakia lepidozioides (Takakiopsida, Bryophyta): evolutionary perspectives on the largest collection of genes in mosses and the intensive RNA editing
Peer-reviewed
International journal
Atsushi Sadamitsu, Yuya Inoue, Keiko Sakakibara, Hiromi Tsubota, Tomio Yamaguchi, Hironori Deguchi, Tomoaki Nishiyama, Masaki Shimamura
Plant Molecular Biology107
(
4-5
)
431
-
449
11 2021
-
An Agrobacterium ‐mediated stable transformation technique for the hornwort model Anthoceros agrestis
Peer-reviewed
International journal
Eftychios Frangedakis, Manuel Waller, Tomoaki Nishiyama, Hirokazu Tsukaya, Xia Xu, Yuling Yue, Michelle Tjahjadi, Andika Gunadi, Joyce Van Eck, Fay‐Wei Li, Péter Szövényi, Keiko Sakakibara
New Phytologist232
(
3
)
1488
-
1505
19 7 2021
-
The Hornworts: Morphology, evolution and development
Peer-reviewed
International journal
Eftychios Frangedakis, Masaki Shimamura, Juan Carlos Villarreal, Fay‐Wei Li, Marta Tomaselli, Manuel Waller, Keiko Sakakibara, Karen S. Renzaglia, Péter Szövényi
New Phytologist229
(
2
)
735
-
754
15 9 2020
-
Anthoceros genomes illuminate the origin of land plants and the unique biology of hornworts
Peer-reviewed
International journal
Fay-Wei Li, Tomoaki Nishiyama, Manuel Waller, Eftychios Frangedakis, Jean Keller, Zheng Li, Noe Fernandez-Pozo, Michael S. Barker, Tom Bennett, Miguel A. Blázquez, Shifeng Cheng, Andrew C. Cuming, Jan de Vries, Sophie de Vries, Pierre-Marc Delaux, Issa S. Diop, C. Jill Harrison, Duncan Hauser, Jorge Hernández-García, Alexander Kirbis, John C. Meeks, Isabel Monte, Sumanth K. Mutte, Anna Neubauer, Dietmar Quandt, Tanner Robison, Masaki Shimamura, Stefan A. Rensing, Juan Carlos Villarreal, Dolf Weijers, Susann Wicke, Gane K.-S. Wong, Keiko Sakakibara, Péter Szövényi
Nature Plants6
(
3
)
259
-
272
3 2020
-
Transcription factor DUO1 generated by neo-functionalization is associated with evolution of sperm differentiation in plants
Peer-reviewed
International journal
Asuka Higo, Tomokazu Kawashima, Michael Borg, Mingmin Zhao, Irene López-Vidriero, Hidetoshi Sakayama, Sean A. Montgomery, Hiroyuki Sekimoto, Dieter Hackenberg, Masaki Shimamura, Tomoaki Nishiyama, Keiko Sakakibara, Yuki Tomita, Taisuke Togawa, Kan Kunimoto, Akihisa Osakabe, Yutaka Suzuki, Katsuyuki T. Yamato, Kimitsune Ishizaki, Ryuichi Nishihama, Takayuki Kohchi, José M. Franco-Zorrilla, David Twell, Frédéric Berger, Takashi Araki
Nature Communications9
(
1
)
5283
-
5283
12 2018
-
Class III HD-Zip activity coordinates leaf development in Physcomitrella patens
Peer-reviewed
Hoichong Karen Yip, Sandra K. Floyd, Keiko Sakakibara, John L. Bowman
DEVELOPMENTAL BIOLOGY419
(
1
)
184
-
197
11 2016
-
Technological Innovations Give Rise to a New Era of Plant Evolutionary Developmental Biology
Peer-reviewed
K. Sakakibara
GENOMES AND EVOLUTION OF CHAROPHYTES, BRYOPHYTES, LYCOPHYTES AND FERNS78
3
-
35
2016
-
Evolution in the Cycles of Life
Invited
Peer-reviewed
John L. Bowman, Keiko Sakakibara, Chihiro Furumizu, Tom Dierschke
ANNUAL REVIEW OF GENETICS, VOL 5050
133
-
154
2016
-
Antagonistic Roles for KNOX1 and KNOX2 Genes in Patterning the Land Plant Body Plan Following an Ancient Gene Duplication
Peer-reviewed
Chihiro Furumizu, John Paul Alvarez, Keiko Sakakibara, John L. Bowman
PLOS GENETICS11
(
2
)
ee1004980
2 2015
-
WOX13-like genes are required for reprogramming of leaf and protoplast cells into stem cells in the moss Physcomitrella patens
Peer-reviewed
Keiko Sakakibara, Pascal Reisewitz, Tsuyoshi Aoyama, Thomas Friedrich, Sayuri Ando, Yoshikatsu Sato, Yosuke Tamada, Tomoaki Nishiyama, Yuji Hiwatashi, Tetsuya Kurata, Masaki Ishikawa, Hironori Deguchi, Stefan A. Rensing, Wolfgang Werr, Takashi Murata, Mitsuyasu Hasebe, Thomas Laux
DEVELOPMENT141
(
8
)
1660
-
1670
4 2014
-
Evolution of the Class IV HD-Zip Gene Family in Streptophytes
Peer-reviewed
Christopher S. Zalewski, Sandra K. Floyd, Chihiro Furumizu, Keiko Sakakibara, Dennis W. Stevenson, John L. Bowman
MOLECULAR BIOLOGY AND EVOLUTION30
(
10
)
2347
-
2365
10 2013
-
KNOX2 Genes Regulate the Haploid-to-Diploid Morphological Transition in Land Plants
Peer-reviewed
Keiko Sakakibara, Sayuri Ando, Hoichong Karen Yip, Yosuke Tamada, Yuji Hiwatashi, Takashi Murata, Hironori Deguchi, Mitsuyasu Hasebe, John L. Bowman
SCIENCE339
(
6123
)
1067
-
1070
3 2013
-
Gametangia development in the moss Physcomitrella patens.
Peer-reviewed
Kofuji R, Yoshimura T, Inoue H, Sakakibara K, Hiwatashi Y, Kurt T, Aoyama T, Ueda K, Hasebe N
Annual Plant Reviews, Volume36 The moss <i>Physcomitrella patens</i>36
167
-
181
6 2009
-
Class 1 KNOX genes are not involved in shoot development in the moss Physcomitrella patens but do function in sporophyte development
Peer-reviewed
Keiko Sakakibara, Tomoaki Nishiyama, Hironori Deguchi, Mitsuyasu Hasebe
EVOLUTION & DEVELOPMENT10
(
5
)
555
-
566
9 2008
-
The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants
Peer-reviewed
Stefan A. Rensing, Daniel Lang, Andreas D. Zimmer, Astrid Terry, Asaf Salamov, Harris Shapiro, Tomoaki Nishiyama, Pierre-Francois Perroud, Erika A. Lindquist, Yasuko Kamisugi, Takako Tanahashi, Keiko Sakakibara, Tomomichi Fujita, Kazuko Oishi, Tadasu Shin-I, Yoko Kuroki, Atsushi Toyoda, Yutaka Suzuki, Shin-ichi Hashimoto, Kazuo Yamaguchi, Sumio Sugano, Yuji Kohara, Asao Fujiyama, Aldwin Anterola, Setsuyuki Aoki, Neil Ashton, W. Brad Barbazuk, Elizabeth Barker, Jeffrey L. Bennetzen, Robert Blankenship, Sung Hyun Cho, Susan K. Dutcher, Mark Estelle, Jeffrey A. Fawcett, Heidrun Gundlach, Kousuke Hanada, Alexander Heyl, Karen A. Hicks, Jon Hughes, Martin Lohr, Klaus Mayer, Alexander Melkozernov, Takashi Murata, David R. Nelson, Birgit Pils, Michael Prigge, Bernd Reiss, Tanya Renner, Stephane Rombauts, Paul J. Rushton, Anton Sanderfoot, Gabriele Schween, Shin-Han Shiu, Kurt Stueber, Frederica L. Theodoulou, Hank Tu, Yves Van de Peer, Paul J. Verrier, Elizabeth Waters, Andrew Wood, Lixing Yang, David Cove, Andrew C. Cuming, Mitsuyasu Hasebe, Susan Lucas, Brent D. Mishler, Ralf Reski, Igor V. Grigoriev, Ralph S. Quatrano, Jeffrey L. Boore
SCIENCE319
(
5859
)
64
-
69
1 2008
-
Green genes - Comparative genomics of the green branch of life
Peer-reviewed
John L. Bowman, Sandra K. Floyd, Keiko Sakakibara
CELL129
(
2
)
229
-
234
4 2007
-
KNOX homeobox genes potentially have similar function in both diploid unicellular and multicellular meristems, but not in haploid meristems
Peer-reviewed
R Sano, CM Juarez, B Hass, K Sakakibara, M Ito, JA Banks, M Hasebe
EVOLUTION & DEVELOPMENT7
(
1
)
69
-
78
1 2005
-
Involvement of auxin and a homeodomain-leucine zipper I gene in rhizoid development of the moss Physcomitrella patens
Peer-reviewed
K Sakakibara, T Nishiyama, N Sumikawa, R Kofuji, T Murata, M Hasebe
DEVELOPMENT130
(
20
)
4835
-
4846
10 2003
-
Characterization of a FLORICAULA/LEAFY homologue of Gnetum parvifolium and its implications for the evolution of reproductive organs in seed plants
Peer-reviewed
S Shindo, K Sakakibara, R Sano, K Ueda, M Hasebe
INTERNATIONAL JOURNAL OF PLANT SCIENCES162
(
6
)
1199
-
1209
11 2001
-
Isolation of homeodomain-leucine zipper genes from the moss Physcomitrella patens and the evolution of homeodomain-leucine zipper genes in land plants
Peer-reviewed
K. Sakakibara, T. Nishiyama, M. Kato, M. Hasebe
Molecular Biology and Evolution18
(
4
)
491
-
502
2001
-
Tagged mutagenesis and gene-trap in the moss, Physcomitrella patens by shuttle mutagenesis
Peer-reviewed
Tomoaki Nishiyama, Yuji Hiwatashi, Keiko Sakakibara, Masahiro Kato, Mitsuyasu Hasebe
DNA Research7
(
1
)
9
-
17
2000