-
The clade-specific target recognition mechanisms of plant RISCs
Peer-reviewed
Hiro-oki Iwakawa
Nucleic Acids Research52
(
11
)
6662
-
6673
16 4 2024
-
Mechanisms that regulate the production of secondary siRNAs in plants
Invited
Peer-reviewed
Yuji Fujimoto, Hiro-oki Iwakawa
The Journal of Biochemistry174
(
6
)
491
-
499
26 9 2023
-
Molecular mechanisms of secondary siRNAs biogenesis in plants
Fujimoto Yuji, Iwakawa Hiro-oki
95
(
3
)
346
-
350
25 6 2023
-
The mechanisms of siRNA selection by plant Argonaute proteins triggering DNA methylation
Peer-reviewed
Wei Liu, Keisuke Shoji, Masahiro Naganuma, Yukihide Tomari, Hiro-oki Iwakawa
Nucleic Acids Research50
(
22
)
12997
-
13010
9 12 2022
-
Functional specialization of monocot DCL3 and DCL5 proteins through the evolution of the PAZ domain
Peer-reviewed
International journal
Shirui Chen, Wei Liu, Masahiro Naganuma, *Yukihide Tomari, *Hiro-oki Iwakawa
Nucleic Acids Research50
(
8
)
4669
-
4684
5 4 2022
-
Life of RISC: Formation, action, and degradation of RNA-induced silencing complex
Invited
Peer-reviewed
International journal
*Hiro-oki Iwakawa, *Yukihide Tomari
Molecular Cell82
(
1
)
30
-
43
1 2022
-
Cell-free reconstitution reveals the molecular mechanisms for the initiation of secondary siRNA biogenesis in plants
Peer-reviewed
International journal
Yuriki Sakurai, Kyungmin Baeg, Andy Y. W. Lam, Keisuke Shoji, *Yukihide Tomari, *Hiro-oki Iwakawa
Proceedings of the National Academy of Sciences118
(
31
)
e2102889118
-
e2102889118
3 8 2021
-
Ribosome stalling caused by the Argonaute-microRNA-SGS3 complex regulates the production of secondary siRNAs in plants
Peer-reviewed
International journal
*Hiro-oki Iwakawa, Andy Y.W. Lam, Akira Mine, Tomoya Fujita, Kaori Kiyokawa, Manabu Yoshikawa, Atsushi Takeda, Shintaro Iwasaki, Yukihide Tomari
Cell Reports35
(
13
)
109300
-
109300
29 6 2021
-
Plant 22-nt siRNAs mediate translational repression and stress adaptation
Huihui Wu, Bosheng Li, Hiro-oki Iwakawa, Yajie Pan, Xianli Tang, Qianyan Ling-hu, Yuelin Liu, Shixin Sheng, Li Feng, Hong Zhang, Xinyan Zhang, Zhonghua Tang, Xinli Xia, Jixian Zhai, Hongwei Guo
Nature581
(
7806
)
89
-
93
29 4 2020
-
In vitro RNA-dependent RNA Polymerase Assay Using Arabidopsis RDR6
Invited
Peer-reviewed
International journal
Kyungmin Baeg, Yukihide Tomari, *Hiro-oki Iwakawa.
Bio-protocol8
(
1
)
e2673
1 2018
-
Silencing messages in a unique way
Invited
Peer-reviewed
*Hiro-oki Iwakawa and *Yukihide Tomari.
Nature Plants3
(
10
)
769
-
770
10 2017
-
Biochemical and single-molecule analyses of the RNA silencing suppressing activity of CrPV-1A
Peer-reviewed
Mariko Watanabe, Hiro-oki Iwakawa, Hisashi Tadakuma, Yukihide Tomari
Nucleic Acids Research45
(
18
)
10837
-
10844
10 2017
-
Requirement for eukaryotic translation initiation factors in cap-independent translation differs between bipartite genomic RNAs of red clover necrotic mosaic virus
Peer-reviewed
Yuri Tajima, Hiro-oki Iwakawa, Kiwamu Hyodo, Masanori Kaido, Kazuyuki Mise, Tetsuro Okuno
Virology509
152
-
158
9 2017
-
In Vitro Analysis of ARGONAUTE-Mediated Target Cleavage and Translational Repression in Plants
Invited
Yukihide Tomari and *Hiro-oki Iwakawa.
Methods in Molecular Biology1640
55
-
71
6 2017
-
The poly(A) tail blocks RDR6 from converting self mRNAs into substrates for gene silencing
Peer-reviewed
Kyungmin Baeg, *Hiro-oki Iwakawa and *Yukihide Tomari.
Nature Plants3
(
4
)
Article number: 17036
4 2017
-
The Functions of MicroRNAs: mRNA Decay and Translational Repression.
Invited
Peer-reviewed
Hiro-oki Iwakawa, Yukihide Tomari
Trends in cell biology25
(
11
)
651
-
665
11 2015
-
MicroRNAs Block Assembly of eIF4F Translation Initiation Complex in Drosophila
Peer-reviewed
#Takashi Fukaya, #Hiro-oki Iwakawa, Yukihide Tomari.
Molecular Cell56
(
1
)
67
-
78
10 2014
-
Molecular Insights into microRNA-Mediated Translational Repression in Plants
Hiro-oki Iwakawa, Yukihide Tomari
Molecular Cell52
(
4
)
591
-
601
11 2013
-
Arabidopsis ARGONAUTE7 selects miR390 through multiple checkpoints during RISC assembly.
Peer-reviewed
Yayoi Endo, *Hiro-oki Iwakawa and *Yukihide Tomari.
EMBO reports14
(
7
)
652
-
658
7 2013
-
Poly(A)-Binding Protein Facilitates Translation of an Uncapped/Nonpolyadenylated Viral RNA by Binding to the 3 ' Untranslated Region
Peer-reviewed
Hiro-oki Iwakawa, Yuri Tajima, Takako Taniguchi, Masanori Kaido, Kazuyuki Mise, Yukihide Tomari, Hisaaki Taniguchi and Tetsuro Okuno.
Journal of Virology86
(
15
)
7836
-
7849
8 2012
-
A long-distance RNA-RNA interaction plays an important role in programmed-1 ribosomal frameshifting in the translation of p88 replicase protein of Red clover necrotic mosaic virus
Peer-reviewed
Yuri Tajima, Hiro-oki Iwakawa, Masanori Kaido, Kazuyuki Mise, Tetsuro Okuno
Virology417
(
1
)
169
-
178
8 2011
-
Identification of amino acids in auxiliary replicase protein p27 critical for its RNA-binding activity and the assembly of the replicase complex in Red clover necrotic mosaic virus.
Peer-reviewed
Kiwamu Hyodo, Akira Mine, Hiro-oki Iwakawa, Masanori Kaido, Kazuyuki Mise and Tetsuro Okuno.
Virology413
(
2
)
300
-
309
5 2011
-
Template Recognition Mechanisms by Replicase Proteins Differ between Bipartite Positive-Strand Genomic RNAs of a Plant Virus
Peer-reviewed
Hiro-oki Iwakawa, Akira Mine, Kiwamu Hyodo, Mengnan An, Masanori Kaido, Kazuyuki Mise, Tetsuro Okuno
Journal of Virology85
(
1
)
497
-
509
1 2011
-
A Y-shaped RNA structure in the 3' untranslated region together with the trans-activator and core promoter of Red clover necrotic mosaic virus RNA2 is required for its negative-strand RNA synthesis.
Peer-reviewed
Mengnan An, Hiro-oki Iwakawa, Akira Mine, Masanori Kaido, Kazuyuki Mise and Tetsuro Okuno.
Virology405
(
1
)
100
-
109
9 2010
-
Host-dependent roles of the viral 5' untranslated region (UTR) in RNA stabilization and cap-independent translational enhancement mediated by the 3' UTR of Red clover necrotic mosaic virus RNA1.
Peer-reviewed
Siriruk Sarawaneeyaruk, Hiro-oki Iwakawa, Hiroyuki Mizumoto, Hiromi Murakami, Masanori Kaido, Kazuyuki Mise and Tetsuro Okuno.
Virology391
(
1
)
107
-
118
8 2009
-
A viral noncoding RNA generated by cis-element-mediated protection against 5'->3' RNA decay represses both cap-independent and cap-dependent translation.
Peer-reviewed
Hiro-oki Iwakawa, Hiroyuki Mizumoto, Hideaki Nagano, Yuka Imoto, Kazuma Takigawa, Siriruk Sarawaneeyaruk, Masanori Kaido, Kazuyuki Mise and Tetsuro Okuno.
Journal of virology82
(
20
)
10162
-
10174
10 2008
-
cis-Preferential requirement of a -1 frameshift product p88 for the replication of Red clover necrotic mosaic virus RNA1.
Peer-reviewed
Kimiyuki Okamoto, Hideaki Nagano, Hiro-oki Iwakawa, Hiroyuki Mizumoto, Atsushi Takeda, Masanori Kaido, Kazuyuki Mise and Tetsuro Okuno.
Virology375
(
1
)
205
-
212
5 2008
-
cis-Acting core RNA elements required for negative-strand RNA synthesis and cap-independent translation are separated in the 3'-untranslated region of Red clover necrotic mosaic virus RNA1.
Peer-reviewed
Hiro-oki Iwakawa, Masanori Kaido, Kazuyuki Mise and Tetsuro Okuno.
Virology369
(
1
)
168
-
181
12 2007
-
Cap-independent translation mechanism of red clover necrotic mosaic virus RNA2 differs from that of RNA1 and is linked to RNA replication.
Peer-reviewed
#Hiroyuki Mizumoto, #Hiro-oki Iwakawa, Masanori Kaido, Kazuyuki Mise and Tetsuro Okuno.
Journal of virology80
(
8
)
3781
-
3791
4 2006