-
Evolution of Ribosomal Protein S14 Demonstrated by the Reconstruction of Chimeric Ribosomes in Bacillus subtilis.
Peer-reviewed
International journal
Genki Akanuma, Fujio Kawamura, Satoru Watanabe, Masaki Watanabe, Fumiya Okawa, Yousuke Natori, Hideaki Nanamiya, Kei Asai, Taku Chibazakura, Hirofumi Yoshikawa, Akiko Soma, Takashi Hishida, Yasuyuki Kato-Yamada
Journal of bacteriology203
(
10
)
21 4 2021
-
ATP-binding affinity of the ε subunit of thermophilic F1-ATPase under label-free conditions.
Peer-reviewed
International journal
Miria Fujiwara, Yasuyuki Kato-Yamada
Biochemistry and biophysics reports21
100725
-
100725
3 2020
-
C-terminal regulatory domain of the ε subunit of Fo F1 ATP synthase enhances the ATP-dependent H+ pumping that is involved in the maintenance of cellular membrane potential in Bacillus subtilis.
Peer-reviewed
International journal
Genki Akanuma, Tomoaki Tagana, Maho Sawada, Shota Suzuki, Tomohiro Shimada, Kan Tanaka, Fujio Kawamura, Yasuyuki Kato-Yamada
MicrobiologyOpen8
(
8
)
e00815
8 2019
-
Magnesium Suppresses Defects in the Formation of 70S Ribosomes as Well as in Sporulation Caused by Lack of Several Individual Ribosomal Proteins.
Peer-reviewed
International journal
Genki Akanuma, Kotaro Yamazaki, Yuma Yagishi, Yuka Iizuka, Morio Ishizuka, Fujio Kawamura, Yasuyuki Kato-Yamada
Journal of bacteriology200
(
18
)
15 9 2018
-
Mechanistic Insights into the Activation of Soluble Guanylate Cyclase by Carbon Monoxide: A Multistep Mechanism Proposed for the BAY 41-2272 Induced Formation of 5-Coordinate CO-Heme.
Peer-reviewed
International journal
Ryu Makino, Yuji Obata, Motonari Tsubaki, Tetsutaro Iizuka, Yuki Hamajima, Yasuyuki Kato-Yamada, Keisuke Mashima, Yoshitsugu Shiro
Biochemistry57
(
10
)
1620
-
1631
13 3 2018
-
Essential Role of the ε Subunit for Reversible Chemo-Mechanical Coupling in F1-ATPase.
Peer-reviewed
International journal
Rikiya Watanabe, Makoto Genda, Yasuyuki Kato-Yamada, Hiroyuki Noji
Biophysical journal114
(
1
)
178
-
187
9 1 2018
-
The structural basis of a high affinity ATP binding ε subunit from a bacterial ATP synthase.
Peer-reviewed
International journal
Alexander Krah, Yasuyuki Kato-Yamada, Shoji Takada
PloS one12
(
5
)
e0177907
2017
-
Pressure adaptation of 3-isopropylmalate dehydrogenase from an extremely piezophilic bacterium is attributed to a single amino acid substitution.
Peer-reviewed
International journal
Yuki Hamajima, Takayuki Nagae, Nobuhisa Watanabe, Eiji Ohmae, Yasuyuki Kato-Yamada, Chiaki Kato
Extremophiles : life under extreme conditions20
(
2
)
177
-
86
3 2016
-
Ribosome dimerization is essential for the efficient regrowth of Bacillus subtilis.
Peer-reviewed
International journal
Genki Akanuma, Yuka Kazo, Kazumi Tagami, Hirona Hiraoka, Koichi Yano, Shota Suzuki, Ryo Hanai, Hideaki Nanamiya, Yasuyuki Kato-Yamada, Fujio Kawamura
Microbiology (Reading, England)162
(
3
)
448
-
458
3 2016
-
High affinity nucleotide-binding mutant of the ε subunit of thermophilic F1-ATPase.
Peer-reviewed
International journal
Yasuyuki Kato-Yamada
Biochemical and biophysical research communications469
(
4
)
1129
-
32
22 1 2016
-
Pressure effects on the chimeric 3-isopropylmalate dehydrogenases of the deep-sea piezophilic Shewanella benthica and the atmospheric pressure-adapted Shewanella oneidensis.
Peer-reviewed
International journal
Yuki Hamajima, Takayuki Nagae, Nobuhisa Watanabe, Yasuyuki Kato-Yamada, Takeo Imai, Chiaki Kato
Bioscience, biotechnology, and biochemistry78
(
3
)
469
-
71
2014
-
Severe MgADP inhibition of Bacillus subtilis F1-ATPase is not due to the absence of nucleotide binding to the noncatalytic nucleotide binding sites.
Peer-reviewed
International journal
Toru Ishikawa, Yasuyuki Kato-Yamada
PloS one9
(
9
)
e107197
2014
-
ε subunit of Bacillus subtilis F1-ATPase relieves MgADP inhibition.
Peer-reviewed
International journal
Junya Mizumoto, Yuka Kikuchi, Yo-Hei Nakanishi, Naoto Mouri, Anrong Cai, Tokushiro Ohta, Takamitsu Haruyama, Yasuyuki Kato-Yamada
PloS one8
(
8
)
e73888
2013
-
Hydrophobic shield on the molecular surface enhances thermal stability of ferredoxin of Cyanidioschyzon merolae
Peer-reviewed
Yuko Ueno, Yasuyuki Kato-Yamada, Takeo Imai
Journal of Japanese Society for Extremophiles11
(
2
)
59
-
63
2012
-
ATP binding to the ϵ subunit of thermophilic ATP synthase is crucial for efficient coupling of ATPase and H+ pump activities.
Peer-reviewed
International journal
Fumitaka Kadoya, Shigeyuki Kato, Kei Watanabe, Yasuyuki Kato-Yamada
The Biochemical journal437
(
1
)
135
-
40
1 7 2011
-
Conformational transitions of subunit epsilon in ATP synthase from thermophilic Bacillus PS3.
Peer-reviewed
International journal
Boris A Feniouk, Yasuyuki Kato-Yamada, Masasuke Yoshida, Toshiharu Suzuki
Biophysical journal98
(
3
)
434
-
42
3 2 2010
-
Inhibition of thermophilic F1-ATPase by the ε subunit takes different path from the ADP-Mg inhibition.
Peer-reviewed
Takamitsu Haruyama, Yoko Hirono-Hara, Yasuyuki Kato-Yamada
Biophysics (Nagoya-shi, Japan)6
59
-
65
2010
-
Modulation of nucleotide binding to the catalytic sites of thermophilic F(1)-ATPase by the epsilon subunit: implication for the role of the epsilon subunit in ATP synthesis.
Peer-reviewed
International journal
Taichi Yasuno, Eiro Muneyuki, Masasuke Yoshida, Yasuyuki Kato-Yamada
Biochemical and biophysical research communications390
(
2
)
230
-
4
11 12 2009
-
Visualization of ATP levels inside single living cells with fluorescence resonance energy transfer-based genetically encoded indicators.
Peer-reviewed
International journal
Hiromi Imamura, Kim P Huynh Nhat, Hiroko Togawa, Kenta Saito, Ryota Iino, Yasuyuki Kato-Yamada, Takeharu Nagai, Hiroyuki Noji
Proceedings of the National Academy of Sciences of the United States of America106
(
37
)
15651
-
6
15 9 2009
-
Role of the epsilon subunit of thermophilic F1-ATPase as a sensor for ATP.
Peer-reviewed
International journal
Shigeyuki Kato, Masasuke Yoshida, Yasuyuki Kato-Yamada
The Journal of biological chemistry282
(
52
)
37618
-
23
28 12 2007
-
Structures of the thermophilic F1-ATPase epsilon subunit suggesting ATP-regulated arm motion of its C-terminal domain in F1.
Peer-reviewed
International journal
Hiromasa Yagi, Nobumoto Kajiwara, Hideaki Tanaka, Tomitake Tsukihara, Yasuyuki Kato-Yamada, Masasuke Yoshida, Hideo Akutsu
Proceedings of the National Academy of Sciences of the United States of America104
(
27
)
11233
-
8
3 7 2007
-
gammaepsilon Sub-complex of thermophilic ATP synthase has the ability to bind ATP.
Peer-reviewed
International journal
Satoshi Iizuka, Shigeyuki Kato, Masasuke Yoshida, Yasuyuki Kato-Yamada
Biochemical and biophysical research communications349
(
4
)
1368
-
71
3 11 2006
-
Isolated epsilon subunit of Bacillus subtilis F1-ATPase binds ATP.
Peer-reviewed
International journal
Yasuyuki Kato-Yamada
FEBS letters579
(
30
)
6875
-
8
19 12 2005
-
Real-time monitoring of conformational dynamics of the epsilon subunit in F1-ATPase.
Peer-reviewed
International journal
Ryota Iino, Tomoe Murakami, Satoshi Iizuka, Yasuyuki Kato-Yamada, Toshiharu Suzuki, Masasuke Yoshida
The Journal of biological chemistry280
(
48
)
40130
-
4
2 12 2005
-
Highly coupled ATP synthesis by F1-ATPase single molecules.
Peer-reviewed
International journal
Yannick Rondelez, Guillaume Tresset, Takako Nakashima, Yasuyuki Kato-Yamada, Hiroyuki Fujita, Shoji Takeuchi, Hiroyuki Noji
Nature433
(
7027
)
773
-
7
17 2 2005
-
3P164 Confomations of epsilon subunit in F_1 forced-rotated by magnetic tweezers
Saita E., Iino R., Kato-Yamada Y., Noji H., Suzuki T., Yoshida M.
Seibutsu Butsuri45
S244
2005
-
3P021 Induction factor of structure chnage of TF_1 epsilon subunit
Yagi H., Kajiwara N., Tanaka H., Tsukihara T., Yamada Y., Yoshida M., Akutsu H.
Seibutsu Butsuri45
S209
2005
-
Winding up single F-I-motor protein in femtoliter chambers: The molecular pull-back car.
Peer-reviewed
Y Rondelez, G Tresset, Y Kato-Yamada, H Fujita, S Takeuchi, H Noji
Micro Total Analysis Systems 2004, Vol 1
(
296
)
21
-
23
2005
-
Planar lipid bilayer chip for electrophysiological analysis of membrane proteins
Peer-reviewed
H Suzuki, K Tabata, Y Kato-Yamada, H Noji, S Takeuchi
MICRO TOTAL ANALYSIS SYSTEMS 2004, VOL 2
(
297
)
246
-
248
2005
-
Ultra-small chamber for single-molecule detection of biological reaction
Hiroyuki Noji, Yannick Rondelez, Takako Nakashima, Guillaume Tresset, Kazuhito Tabata, Yasuyuki Kato-Yamada, Hiroyuki Fujita, Shoji Takeuchi
e-Journal of Surface Science and Nanotechnology3
79
-
81
2005
-
Planar lipid bilayer reconstitution with a micro-fluidic system.
International journal
Hiroaki Suzuki, Kazuhito Tabata, Yasuyuki Kato-Yamada, Hiroyuki Noji, Shoji Takeuchi
Lab on a chip4
(
5
)
502
-
5
10 2004
-
Planar lipid membrane array for membrane protein chip
Peer-reviewed
H Suzuki, Y Kato-Yamada, H Noji, S Takeuchi
MEMS 2004: 17TH IEEE INTERNATIONAL CONFERENCE ON MICRO ELECTRO MECHANICAL SYSTEMS, TECHNICAL DIGEST
272
-
275
2004
-
3P137 X-ray crystal structure analysis of TF_1 epsilon subunit
Kajiwara N., Tanaka H., Yagi H., Tsukihara T., Yamada Y., Yoshida M., Akutsu H.
Seibutsu Butsuri44
S224
2004
-
Planar lipid bilayer reconstitution with a micro-fluidic system
Peer-reviewed
H Suzuki, K Tabata, Y Kato-Yamada, H Noji, S Takeuchi
LAB ON A CHIP4
(
5
)
502
-
505
2004
-
Isolated epsilon subunit of thermophilic F1-ATPase binds ATP.
Peer-reviewed
International journal
Yasuyuki Kato-Yamada, Masasuke Yoshida
The Journal of biological chemistry278
(
38
)
36013
-
6
19 9 2003
-
The role of the beta DELSEED motif of F-1-ATPase - Propagation of the inhibitory effect of the epsilon subunit
Peer-reviewed
KY Hara, Y Kato-Yamada, Y Kikuchi, T Hisabori, M Yoshida
JOURNAL OF BIOLOGICAL CHEMISTRY276
(
26
)
23969
-
23973
6 2001
-
Movement of the helical domain of the epsilon subunit is required for the activation of thermophilic F-1-ATPase
Peer-reviewed
Y Kato-Yamada, M Yoshida, T Hisabori
JOURNAL OF BIOLOGICAL CHEMISTRY275
(
46
)
35746
-
35750
11 2000
-
epsilon Subunit, an endogenous inhibitor of bacterial F-1-ATPase, also inhibits F0F1-ATPase
Peer-reviewed
Y Kato-Yamada, D Bald, M Koike, K Motohashi, T Hisabori, M Yoshida
JOURNAL OF BIOLOGICAL CHEMISTRY274
(
48
)
33991
-
33994
11 1999
-
Direct observation of the rotation of epsilon subunit in F-1-ATPase
Peer-reviewed
Y Kato-Yamada, H Noji, R Yasuda, K Kinosita, M Yoshida
JOURNAL OF BIOLOGICAL CHEMISTRY273
(
31
)
19375
-
19377
7 1998
-
Thermophilic F-1-ATPase is activated without dissociation of an endogenous inhibitor, epsilon subunit
Peer-reviewed
Y Kato, T Matsui, N Tanaka, E Muneyuki, T Hisabori, M Yoshida
JOURNAL OF BIOLOGICAL CHEMISTRY272
(
40
)
24906
-
24912
10 1997
-
The regulatory functions of the gamma and epsilon subunits from chloroplast CF1 are transferred to the core complex, alpha(3)beta(3), from thermophilic bacterial F-1
Peer-reviewed
T Hisabori, Y Kato, K Motohashi, P KrothPancic, H Strotmann, T Amano
EUROPEAN JOURNAL OF BIOCHEMISTRY247
(
3
)
1158
-
1165
8 1997
-
ANALYSIS OF TIME-DEPENDENT CHANGE OF ESCHERICHIA-COLI F1-ATPASE ACTIVITY AND ITS RELATIONSHIP WITH APPARENT NEGATIVE COOPERATIVITY
Peer-reviewed
Y KATO, T SASAYAMA, E MUNEYUKI, M YOSHIDA
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS1231
(
3
)
275
-
281
10 1995