2025/05/01 更新

写真b

オオクボ ナミ
大久保 奈弥
OKUBO,NAMI
*大学が定期的に情報更新している項目(その他は、researchmapの登録情報を転載)
所属*
環境学部開設準備室
職名*
教授
学位
理学博士 ( 2005年3月   東京工業大学 ) / 水産学修士 ( 2001年3月   *東京水産大学* ) / 文学学士 ( 1999年3月   立教大学 )
研究キーワード
  • 発生

  • 生殖

  • 海洋環境保全

  • サンゴ

  • 担当科目*
    学内職務経歴*
    • 2025年4月 - 現在 
      環境学部開設準備室   教授
     

    研究分野

    • その他 / その他  / 海洋保全学

    • ライフサイエンス / 発生生物学

    • 環境・農学 / 生物資源保全学

    • ライフサイエンス / 形態、構造

    経歴

    • 2025年4月 - 現在 
      立教大学   環境学部開設準備室   教授

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    • 2022年4月 - 2025年3月 
      東京経済大学   全学共通教育センター   教授

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    • 2015年4月 - 2022年3月 
      東京経済大学   全学共通教育センター   准教授

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    • 2020年5月 - 2021年3月 
      名古屋大学   大学院理学研究科   招聘准教授

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    • 2012年4月 - 2015年3月 
      東京経済大学   経済学部・全学共通教育センター   専任講師

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    • 2010年11月 - 2012年3月 
      慶應義塾大学   自然科学教育研究センター   特任助教

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    • 2009年10月 - 2010年10月 
      オーストラリア国立大学   日本学術振興会PD・優秀若手研究者海外派遣事業

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    • 2008年4月 - 2009年9月 
      京都大学   瀬戸臨海実験所   学術振興会PD

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    • 2008年1月 - 2008年3月 
      横浜国立大学   COEポストドクトラルフェロー

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    • 2005年 - 2007年 
      東京工業大学   生命理工学研究科   産学官連携研究員

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    ▼全件表示

    学歴

    • - 2005年 
      東京工業大学   理学系研究科   生体システム専攻

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      国名: 日本国

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    • - 2001年 
      東京水産大学   水産学研究科   増殖生態学

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      国名: 日本国

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    • - 1999年 
      立教大学   文学部   ドイツ文学科

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      国名: 日本国

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    委員歴

    • 2024年 - 現在 
      ブルーフラッグ   国内審査員

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    •  
      公益財団法人 藤原ナチュラルヒストリー振興財団   評議員

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    •  
      日本環境会議   理事

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    •  
      生態学会自然保護専門委員   幹事

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    受賞

    • 2017年  
      Zoological Science Awards 
       
      大久保 奈弥

      詳細を見る

    • 2017年  
      日本動物学会  藤井賞 
       
      大久保 奈弥

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    論文

    • First observation of pedal laceration in the octocoral <i>Sarcophyton</i> sp. 査読有り

      Nami Okubo

      Invertebrate Reproduction &amp; Development   1 - 2   2024年1月12日

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      担当区分:筆頭著者, 責任著者   掲載種別:研究論文(学術雑誌)   出版者・発行元:Informa UK Limited  

      DOI: 10.1080/07924259.2024.2304350

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    • Insights into coral restoration projects in Japan 査読有り

      Nami Okubo

      Ocean and Coastal Management   2023年

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      担当区分:筆頭著者, 責任著者  

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    • Observation of disk autotomy or possible fission in the basket star (Order Euryarida, Class Ophiuroidea, Phylum Echinoderms)

      東京経済大学人文自然科学論集148   193 - 194   2021年

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      担当区分:筆頭著者, 責任著者   記述言語:英語   掲載種別:研究論文(大学,研究機関等紀要)  

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    • Experimental observation of microplastics invading the endoderm of anthozoan polyps 査読有り

      Nami Okubo, Miwa Nakano Tamura, Tatsuo Watanabe

      Marine Environmental Researchin press   2020年

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      担当区分:筆頭著者, 責任著者   掲載種別:研究論文(学術雑誌)  

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    • Lipid composition of gametes in scleractinian corals: Wax-esters generate buoyancy for the gametes 査読有り

      Nami Okubo, Yoshikatsu Nakano, Masatoshi Mita

      Invertebrate Reproduction and Developmentin press   2020年

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      担当区分:筆頭著者  

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    • 神奈川県逗子市小坪大崎で確認された最北限のサンゴイソギンチャク個体群 査読有り

      大久保奈弥, 田所悟, 松永敬, 柳研介

      神奈川県自然史資料2019 ( 40 ) 25 - 28   2019年2月

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      担当区分:筆頭著者, 責任著者   記述言語:日本語   出版者・発行元:神奈川県立生命の星・地球博物館(旧神奈川県立博物館)  

      DOI: 10.32225/nkpmnh.2019.40_25

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    • 遠隔地体験型実習プログラムの開発と実践:サンゴとさんご礁の環境教育 査読有り

      大久保奈弥, 小野裕剛, 倉石立

      環境教育   2019年

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      担当区分:筆頭著者, 責任著者   掲載種別:研究論文(学術雑誌)  

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    • Microplastics disturb the anthozoan-algae symbiotic relationship. 査読有り

      Okubo N, Takahashi S, Nakano Y

      Marine pollution bulletin135   83 - 89   2018年10月

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      担当区分:筆頭著者, 責任著者  

      DOI: 10.1016/j.marpolbul.2018.07.016

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    • サンゴの移植は環境保全措置となり得ない : 自然再生に隠された研究者と行政の責任

      大久保 奈弥

      世界 ( 902 ) 126 - 136   2017年12月

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      記述言語:日本語   出版者・発行元:岩波書店  

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    • Coral individuality - confluence of change physical splitting and developmental ability of embryos 査読有り

      Nami Okubo, Sho Toshino, Yoshikatsu Nakano, Hiromi H. Yamamoto

      SCIENTIFIC REPORTS7 ( 1 ) 16006   2017年11月

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      担当区分:筆頭著者, 責任著者   記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:NATURE PUBLISHING GROUP  

      Previous studies have suggested that blastomeres from the 2-, 4-, or 8-cell stage of corals have the ability to develop into normal primary polyps. However, it is still not known which developmental stage's blastomere produces which juvenile. In this study, we demonstrated that only the blastomeres with animal hemispheres have the capacity to develop into normal primary polyps. Individuality was evaluated using blastomeres isolated from the corals Acropora digitifera, A. intermedia, Dipsastraea lizardensis, and Favites chinensis. On commencement of embryo cleavage, the animal pole was marked using Neutral red staining, and at the 2-, 4-, and 8-cell stages, embryos were divided into individual blastomeres using glass needles. We found that the survival rate and percentage metamorphosis were higher in the larger-sized blastomeres with animal hemispheres. The vegetal hemisphere alone is incapable of developing into a normal primary polyp; however, a ball-shaped embryo with incomplete mesenteries and no pharynx developed in some cases. These results indicate that the animal hemisphere is needed for corals to develop into normal primary polyps, and that the individuality of corals is possibly determined by a combination of the chance physical splitting of embryos by waves and their innate developmental ability.

      DOI: 10.1038/s41598-017-16273-w

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    • Acceptable symbiont cell size differs among cnidarian species and may limit symbiont diversity 査読有り

      Elise Biquand, Nami Okubo, Yusuke Aihara, Vivien Rolland, David C. Hayward, Masayuki Hatta, Jun Minagawa, Tadashi Maruyama, Shunichi Takahashi

      ISME JOURNAL11 ( 7 ) 1702 - 1712   2017年7月

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      担当区分:筆頭著者   記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:NATURE PUBLISHING GROUP  

      Reef-building corals form symbiotic relationships with dinoflagellates of the genus Symbiodinium. Symbiodinium are genetically and physiologically diverse, and corals may be able to adapt to different environments by altering their dominant Symbiodinium phylotype. Notably, each coral species associates only with specific Symbiodinium phylotypes, and consequently the diversity of symbionts available to the host is limited by the species specificity. Currently, it is widely presumed that species specificity is determined by the combination of cell-surface molecules on the host and symbiont. Here we show experimental evidence supporting a new model to explain at least part of the specificity in coral-Symbiodinium symbiosis. Using the laboratory model Aiptasia-Symbiodinium system, we found that symbiont infectivity is related to cell size; larger Symbiodinium phylotypes are less likely to establish a symbiotic relationship with the host Aiptasia. This size dependency is further supported by experiments where symbionts were replaced by artificial fluorescent microspheres. Finally, experiments using two different coral species demonstrate that our size-dependent-infection model can be expanded to coral-Symbiodinium symbiosis, with the acceptability of large-sized Symbiodinium phylotypes differing between two coral species. Thus the selectivity of the host for symbiont cell size can affect the diversity of symbionts in corals.

      DOI: 10.1038/ismej.2017.17

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    • サイエンスカフェ・サイエンスツアーを組み合わせた社会科学系学部生への正課外自然科学教育実践 査読有り

      新正裕尚, 榎基宏, 大久保奈弥, 阿部弘樹

      科学技術コミュニケーション(Web) ( 21 ) 79‐87 (WEB ONLY) - 87   2017年6月

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      記述言語:日本語   出版者・発行元:北海道大学 高等教育推進機構 オープンエデュケーションセンター 科学技術コミュニケーション教育研究部門(CoSTEP)  

      社会科学系の学部のみを有する私立大学の学部学生向けに,サイエンスカフェ,サイエンスツアーを組み合わせた正課外の自然科学教育を5年間にわたり学内の資金援助を得て組織的に行った.資金援助終了後は経常経費内で取り組みの継続を模索している.これらの取り組みは,正課での自然科学教育が縮小する傾向のある中で,社会科学系専攻の学生の科学リテラシーの向上と科学への興味の涵養を目指すものである.一部の参加学生はイベントに積極的に取り組み,提示された話題, 見学内容を自らに関連した問題として捉えることができた.

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    • A story of the successful application of a co-management fishing regime in Suruga Bay, Japan

      Makoto Omori, Ayumi Onuma, Nami Okubo

      Handbook on the Economics and Management of Sustainable Oceans   278 - 295   2017年2月24日

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      記述言語:英語   掲載種別:論文集(書籍)内論文   出版者・発行元:Edward Elgar Publishing Ltd.  

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    • 逗子市小坪大崎の砂浜海岸に生息する生物の記録(2016): 資料

      大久保 奈弥, 近藤 琴乃, 北原 直哉, 長谷川 実李

      人文自然科学論集 = The Journal of Humanities and Natural Sciences ( 140 ) 159 - 160   2017年2月

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      記述言語:日本語   出版者・発行元:東京経済大学人文自然科学研究会  

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    • 横須賀市天神島に生息する貝類の記録(2015) : 資料

      大久保 奈弥, 栗原 健太, 高橋 周平, 長谷川 実李

      人文自然科学論集 = The Journal of Humanities and Natural Sciences ( 139 ) 83 - 84   2016年12月

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      記述言語:日本語   出版者・発行元:東京経済大学人文自然科学研究会  

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    • 多様なサンゴの発生観察からようやく見えてきた共通性 (特集 サンゴの生物学(下)) 査読有り

      大久保 奈弥

      生物科学68 ( 1 ) 11 - 23,図巻頭2p   2016年10月

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      担当区分:筆頭著者, 責任著者   記述言語:日本語   出版者・発行元:日本生物科学者協会 ; 1949-  

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    • サンゴとさんご礁 (特集 サンゴの生物学(上)) 査読有り

      大久保 奈弥

      生物科学67 ( 4 ) 194 - 200,図巻頭2p   2016年7月

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      担当区分:筆頭著者, 責任著者   記述言語:日本語   出版者・発行元:日本生物科学者協会 ; 1949-  

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    • Restructuring the Traditional Suborders in the Order Scleractinia Based on Embryogenetic Morphological Characteristics 査読有り

      Nami Okubo

      ZOOLOGICAL SCIENCE33 ( 1 ) 116 - 123   2016年2月

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      担当区分:筆頭著者, 責任著者   記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:ZOOLOGICAL SOC JAPAN  

      The order Scleractinia includes two distinct groups, which are termed "complex" and "robust" as indicated by the molecular phylogeny of mitochondrial 16S ribosomal gene sequences. Since this discovery, coral taxonomists have been seeking morphological characters for grouping this deep division in the order Scleractinia. Recently, morphological characteristics during embryogenesis that facilitate grouping the two clades as "complex" and "robust" were reported, thus clarifying a deep division in the Scleractinia. In the present report, I establish two new suborders, Refertina and Vacatina, on the basis of the embryogenetic morphological characteristics, molecular data, and new observations of Tubastraea coccinea and Cyphastrea serailia embryogenesis. In particular, the embryo of T. coccinea has a possible fertilization membrane that was first observed in the phylum Cnidaria. The new suborder Refertina consists of the families that belong to the "complex" clade and have no or little blastocoel. The new suborder Vacatina is composed of the families that fall into the "robust" clade and have an apparent blastocoel.

      DOI: 10.2108/zs150094

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    • A comparative view of early development in the corals Favia lizardensis, Ctenactis echinata, and Acropora millepora - morphology, transcriptome, and developmental gene expression 査読有り

      Nami Okubo, David C. Hayward, Sylvain Foret, Eldon E. Ball

      BMC EVOLUTIONARY BIOLOGY16   48   2016年2月

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      担当区分:筆頭著者, 責任著者   記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:BIOMED CENTRAL LTD  

      Background: Research into various aspects of coral biology has greatly increased in recent years due to anthropogenic threats to coral health including pollution, ocean warming and acidification. However, knowledge of coral early development has lagged. The present paper describes the embryonic development of two previously uncharacterized robust corals, Favia lizardensis (a massive brain coral) and Ctenactis echinata (a solitary coral) and compares it to that of the previously characterized complex coral, Acropora millepora, both morphologically and in terms of the expression of a set of key developmental genes.
      Results: Illumina sequencing of mixed age embryos was carried out, resulting in embryonic transcriptomes consisting of 40605 contigs for C.echinata (N50 = 1080 bp) and 48536 contigs for F.lizardensis (N50 = 1496 bp). The transcriptomes have been annotated against Swiss-Prot and were sufficiently complete to enable the identification of orthologs of many key genes controlling development in bilaterians. Developmental series of images of whole mounts and sections reveal that the early stages of both species contain a blastocoel, consistent with their membership of the robust clade. In situ hybridization was used to examine the expression of the developmentally important genes brachyury, chordin and forkhead. The expression of brachyury and forkhead was consistent with that previously reported for Acropora and allowed us to confirm that the pseudo-blastopore sometimes seen in robust corals such as Favia spp. is not directly associated with gastrulation. C.echinata chordin expression, however, differed from that seen in the other two corals.
      Conclusions: Embryonic transcriptomes were assembled for the brain coral Favia lizardensis and the solitary coral Ctenactis echinata. Both species have a blastocoel in their early developmental stages, consistent with their phylogenetic position as members of the robust clade. Expression of the key developmental genes brachyury, chordin and forkhead was investigated, allowing comparison to that of their orthologs in Acropora, Nematostella and bilaterians and demonstrating that even within the Anthozoa there are significant differences in expression patterns.

      DOI: 10.1186/s12862-016-0615-2

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    • Direct evidence of sexual reproduction in the zebra coral, Oulastrea crispata (Anthozoa, Scleractinia), in Japan 査読有り

      Yuna Zayasu, Katsumi Miyazaki, Yi-Ting Lien, Nami Okubo

      INVERTEBRATE REPRODUCTION & DEVELOPMENT59 ( 2 ) 61 - 65   2015年4月

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      担当区分:最終著者, 責任著者   記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:TAYLOR & FRANCIS LTD  

      Reproductive traits of scleractinian corals are important in understanding their ecology and for maintaining coral populations; however, it has been reported for no more than 30% of species. Oulastrea crispata (Lamark, 1816) has the greatest north-south distribution in the Indo-West Pacific. This species is also known as one of the most stress-tolerant corals. Thus, most previous studies on O. crispata have examined its physiological, ecological, morphological, or genetic traits and its symbiotic dinoflagellates relative to its broad distribution and its stress tolerance. However, there have been few studies on its reproduction. In this study, the release of sperm and eggs of O. crispata was observed under laboratory rearing conditions in Shirahama, Kii Peninsula, Japan. This is the first direct evidence of sexual reproduction in this species, and the contribution of sexual reproduction to Oulastrea biology is briefly discussed.

      DOI: 10.1080/07924259.2015.1006340

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    • An economic and ecological consideration of commercial coral transplantation to restore the marine ecosystem in Okinawa, Japan 査読有り

      Nami Okubo, Ayumi Onuma

      ECOSYSTEM SERVICES11   39 - 44   2015年2月

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      記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:ELSEVIER SCIENCE BV  

      The deterioration of coral reefs in Japan is a serious environmental problem. Conventional conservation policies for terrestrial ecosystems are sometimes difficult to apply to coral reef protection because of the large number of stakeholders involved. In what seems to be an interesting attempt to solve this problem, tourist divers in Okinawa, Japan have begun to transplant coral fragments onto deteriorated coral reefs, by participating in a tour provided by diving shops. However, the problem here is that when the transplanted fragments have been taken out from the natural coral colonies, it tends to cause a host of potential problems such as decreasing fecundity of donor colonies, negative effects on the surrounding environment of the exploited corals and low species diversity of transplanted fragments. In this paper, we examine the merits of commercial coral transplantation in marine ecosystem conservation, and to suggest some reforms that could help to mitigate the problems encountered when using sexually propagated coral transplants. Finally, we discuss how the commercial transplantation in Okinawa could be applied to the conservation of other marine ecosystem. (C) 2014 Elsevier B.V. All rights reserved.

      DOI: 10.1016/j.ecoser.2014.07.009

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    • サンゴ礁の保全における移植の現状と展望 査読有り

      大久保 奈弥

      環境経済・政策研究7 ( 1 ) 54 - 58   2014年

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      担当区分:筆頭著者, 責任著者   記述言語:日本語   出版者・発行元:環境経済・政策学会  

      DOI: 10.14927/reeps.7.1_54

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    • Comparative Embryology of Eleven Species of Stony Corals (Scleractinia) 査読有り

      Nami Okubo, Takuma Mezaki, Yoko Nozawa, Yoshikatsu Nakano, Yi-Ting Lien, Hironobu Fukami, David C. Hayward, Eldon E. Ball

      PLOS ONE8 ( 12 ) e84115   2013年12月

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      担当区分:筆頭著者, 責任著者   記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:PUBLIC LIBRARY SCIENCE  

      A comprehensive understanding of coral reproduction and development is needed because corals are threatened in many ways by human activity. Major threats include the loss of their photosynthetic symbionts (Symbiodinium) caused by rising temperatures (bleaching), reduced ability to calcify caused by ocean acidification, increased storm severity associated with global climate change and an increase in predators caused by runoff from human agricultural activity. In spite of these threats, detailed descriptions of embryonic development are not available for many coral species. The current consensus is that there are two major groups of stony corals, the "complex" and the "robust". In this paper we describe the embryonic development of four "complex" species, Pseudosiderastrea tayamai, Galaxea fascicularis, Montipora hispida, and Pavona Decussata, and seven "robust" species, Oulastrea crispata, Platygyra contorta, Favites abdita, Echinophyllia aspera, Goniastrea favulus, Dipsastraea speciosa (previously Favia speciosa), and Phymastrea valenciennesi (previously Montastrea valenciennesi). Data from both histologically sectioned embryos and whole mounts are presented. One apparent difference between these two major groups is that before gastrulation the cells of the complex corals thus far described (mainly Acropora species) spread and flatten to produce the so-called prawn chip, which lacks a blastocoel. Our present broad survey of robust and complex corals reveals that prawn chip formation is not a synapomorphy of complex corals, as Pavona Decussata does not form a prawn chip and has a well-developed blastocoel. Although prawn chip formation cannot be used to separate the two clades, none of the robust corals which we surveyed has such a stage. Many robust coral embryos pass through two periods of invagination, separated by a return to a spherical shape. However, only the second of these periods is associated with endoderm formation. We have therefore termed the first invagination a pseudo-blastopore.

      DOI: 10.1371/journal.pone.0084115

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    • Survival Dynamics of Reef Coral Larvae With Special Consideration of Larval Size and the Genus Acropora 査読有り

      Yoko Nozawa, Nami Okubo

      BIOLOGICAL BULLETIN220 ( 1 ) 15 - 22   2011年2月

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      記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:MARINE BIOLOGICAL LABORATORY  

      Temporal dynamics of larval survival were examined in vitro in four broadcast-spawning reef coral species, Acropora hyacinthus, A. japonica, A. solitaryensis, and Goniastrea pectinata. Larval size was treated as an important characteristic that may relate to larval lifespan. Two patterns were observed in larval survival dynamics between the three Acropora species (mean initial larval size; 0.05-0.08 mm(3)) and G. pectinata (0.02 mm(3)), based on the timing of a sharp drop in larval survival rates (ca. &gt; 50% reduction over a 1-2 week period). Consequently, the majority of larvae of the three Acropora species had a lifespan of less than 2-3 weeks, whereas those of G. pectinata were extended a further 2-3 weeks despite the smaller larval size. No significant relationship was detected between the initial larval size and larval lifespan in any of the four reef coral species. These results suggest that (1) larval dispersal of spawning Acropora species may be on a more local scale than that of G. pectinata and most other reef coral species previously reported, and (2) larval size is not a good estimator of larval lifespan in reef coral species.

      DOI: 10.1086/BBLv220n1p15

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    • サンゴの移植における採取苗と種苗の組み合わせ:―バスケット型供給の経済学的考察―

      大久保 奈弥, 大沼 あゆみ

      日本サンゴ礁学会誌12 ( 1 ) 69 - 80   2010年12月

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      担当区分:筆頭著者   記述言語:日本語   出版者・発行元:The Japanese Coral Reef Society  

      熱帯・亜熱帯の海洋生態系の基盤であるサンゴ礁の劣化は,陸地生態系における森林減少と並んで最も解決すべき問題の1つである。しかし,ステークホルダーの多さから,一般的に陸上で用いられているような保全政策をそのまま適用することが難しい。一方で,サンゴ礁の積極的な修復を目的としたサンゴの移植が行われており,現在では企業ビジネスとして,数多くの移植ツアーが行われている。しかし,このツアーで使用されるサンゴ苗は,自然に生息するサンゴ群体から採取されているため,採取された親群体の繁殖量が低下するといった負の影響がある。また,移植されたサンゴ苗がどの程度生き残っているのかはほとんど報告されておらず,限られた量の群体を分割して移植苗にするので,種や遺伝的な多様性も低い。だが,移植ツアーは,修復活動の費用を節約するとともに,人々への啓蒙効果が期待できる。そこで我々は,本来なら自然界でほとんどが死亡するサンゴ胚から産出した種苗に着目し,既にビジネスとして動いている採取苗と組み合わせて販売する「バスケット型供給」を提案する。この供給方式は,採取苗の低費用性の利点と,種苗の低環境負荷性の利点とをうまく組み合わせたものである。いくつかのケースで,環境効果が最大となるバスケットを例示することで,経済的側面との関わりを説明する。将来的には,移植行為は環境配慮意識により行われることから,カーボンオフセットで見られるように,より環境効果の高いというプレミアムが付いた種苗を選好する差別需要が発生する可能性がある。

      DOI: 10.3755/jcrs.12.69

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    • Reproduction in Cultured versus Wild Coral Colonies: Fertilization, Larval Oxygen Consumption, and Survival 査読有り

      Nami Okubo, Hiromi Hannah Yamamoto, Fumio Nakaya, Ken Okaji

      BIOLOGICAL BULLETIN218 ( 3 ) 230 - 236   2010年6月

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      担当区分:筆頭著者, 責任著者   記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:MARINE BIOLOGICAL LABORATORY  

      In the late 1990s, the once prolific populations of the coral Acropora intermedia surrounding Okinawa, Japan, dramatically declined because of thermal stress, bleaching caused by heat stress, and consequent mortality. Before the bleaching event, 72 fragments (about 15 cm in length) were collected and transferred to the Okinawa Churami Aquarium. Through growth and repeated fragmentation, these original fragments developed into about 100 colonies that spawned from 1999 to 2009. In this study, we compared gametogenesis, fertilization, survival, and O(2) consumption in cultured and wild colonies of A. intermedia and their offspring. Cultured A. intermedia had larger oocytes and higher fertilization and survival rates than samples from wild colonies. O(2) consumption of cultured embryos was similar to that of wild embryos. These results suggest that cultured A. intermedia and their offspring are as viable as wild colonies. Aquaria can play a role in the conservation of endangered corals, and their cultured colonies could be used to re-establish devastated species on the Okinawa reefs.

      DOI: 10.1086/BBLv218n3p230

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    • Sexual Reproduction in Transplanted Coral Fragments of Acropora nasuta 査読有り

      Nami Okubo, Hiroki Taniguchi, Makoto Omori

      ZOOLOGICAL STUDIES48 ( 4 ) 442 - 447   2009年7月

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      担当区分:筆頭著者, 責任著者   記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:ACAD SINICA INST ZOOLOGY  

      Nami Okubo, Hiroki Taniguchi, and Makoto Omori (2009) Sexual reproduction in transplanted coral fragments of Acropora nasuta. Zoological Studies 48(4): 442-447. The survival rate and sexual reproduction were examined after fragmentation and transplantation of the reef-building coral Acropora nasuta. Fragments of 2 different lengths, of approximately 5 and 10 cm, were transplanted onto a reef substrate in July 2001 (n = 85 at 5 cm and 71 at 10 cm) and Feb. 2002 (n = 66 at 5 cm and 66 at 10 cm), corresponding to the early and late vitellogenic stages of oocyte development, respectively. Oocyte development, fecundity, and spawning, were monitored over a 3 yr period. Oocyte development was influenced by both fragment size and season of transplantation. In smaller fragments, oocytes were resorbed, while development continued in larger fragments, suggesting that smaller fragments could not afford to invest in sexual reproduction and converted resources from oocytes into growth/survival. Oocytes of July-transplanted fragments (in the early vitellogenic stage) were resorbed, while oocytes of Feb.-transplanted fragments (in the late vitellogenic stage) continued to develop. This may have occurred because of the large amount of energy needed for further oocyte development in July-transplanted fragments until spawning in June of the following year. Transplanted fragments spawned in the 1st yearn none, except for 1 fragment, spawned in the 2nd year: and no gametes were produced in the 3rd year, indicating that fragments reallocated energy resources. and that infertility occurred for a certain period of time. http://zoolstud.sinica.edu.tw/Journals/48.4/442.pdf

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    • Crystallization and preliminary crystallographic studies of putative RNA 3 &apos;-terminal phosphate cyclase from the crenarchaeon Sulfolobus tokodaii 査読有り

      Satoru Shimizu, Masanori Ohki, Nami Okubo, Kaoru Suzuki, Masaru Tsunoda, Takeshi Sekiguchi, Akio Takenaka

      ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY AND CRYSTALLIZATION COMMUNICATIONS65 ( Pt 6 ) 565 - 570   2009年6月

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      記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:WILEY-BLACKWELL  

      RNA 3&apos;-terminal phosphate cyclase (Rtc) is an enzyme involved in RNA splicing that converts the 3&apos;-terminal hydroxyl group of truncated RNA to 2&apos;,3&apos;-cyclic phosphate, which is required just before its ligation. This reaction may occur in the following two steps: (i) Rtc + ATP -&gt; Rtc-AMP + PP(i) and (ii) RNA-N3&apos;p + Rtc-AMP -&gt; RNA-N&gt;p + Rtc + AMP. In order to reveal the reaction mechanism, Rtc of Sulfolobus tokodaii (St-Rtc) overexpressed in Escherichia coli was purified and crystallized in the following states: St-Rtc, St-Rtc+Mn, St-Rtc+ATP, St-Rtc+AMP and St-Rtc-AMP. The crystals diffracted to 2.25-3.00 angstrom resolution and preliminary solutions of their structures have been obtained by molecular replacement using the structure of a selenomethionine-labelled St-Rtc crystal which was solved in advance using the MAD method as a model. These crystals grew in two different space groups (P3(1) and P4(2)), with the former space group displaying two distinct packing modes.

      DOI: 10.1107/S1744309109014663

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    • Oxygen consumption of a single embryo/planula in the reef-building coral Acropora intermedia 査読有り

      N. Okubo, H. H. Yamamoto, F. Nakaya, K. Okaji

      MARINE ECOLOGY PROGRESS SERIES366   305 - 309   2008年

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      担当区分:筆頭著者, 責任著者   記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:INTER-RESEARCH  

      O-2 consumption of a single embryo/planula at each developmental stage was monitored in the reef-building coral Acropora intermedia using an optical O-2-sensing system with our original micro-chamber system (6.28 mu l). The lowest rate Of O-2 consumption was observed in unfertilized eggs. After fertilization, O-2 consumption increased and remained constant until the prawn chip blastula stage. However, O-2 consumption began to increase again during the bowl-shaped blastula stage, which involves the formation of 2 germ layers and corresponds to the beginning of gastrulation. The rate Of O-2 consumption peaked during the teardrop-shaped planula stage. During this stage planulae are able to swim actively, especially in the vertical plane, so an increase in energy consumption during this stage is to be expected. O-2 consumption began to decrease gradually 5 d after spawning. At this stage, the larvae frequently touched the substrate with their concave aboral end, which features numerous spirocysts required for substrate attachment. When the planulae began to settle, 7 d after spawning, the rate Of O-2 consumption dropped to that of unfertilized eggs, suggesting that the planulae slowly use stored energy for crawling/settlement behavior and/or post-settlement growth and survivorship.

      DOI: 10.3354/meps07562

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    • Crystal structures of RNA 3'-terminal phosphate cyclase and its complexes with Mg2++ATP, ATP or Mn2+. 査読有り

        52   221 - 222   2008年

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    • Size-independent investment allocation to regeneration and growth of the branching coral Acropora muricata 査読有り

      OKUBO Nami

      Galaxea, Journal of Coral Reef Studies10 ( 2 ) 83 - 87   2008年

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      担当区分:筆頭著者, 責任著者   記述言語:英語   出版者・発行元:The Japanese Coral Reef Society  

      To reveal the optimal resource allocation among regeneration, growth, sexual reproduction, and survivorship in a colonial animal, a specimen of the branching coral <I>Acropora muricata</I> (<I>formosa</I>), without oocytes, was separated into fragments of three different sizes (5, 10, and 20cm long) that were then transplanted onto coral pavement. Regardless of the fragment size, a wound was fully closed within 11 days after fragmentation. The number of newly formed polyps on the new tissue layer did not differ significantly among fragment sizes. No significant difference was observed in the monthly growth rate among the three fragment sizes. These results showed that regeneration and growth were independent of fragment size. During the observation period, one 5cm fragment died, the 5cm and 10cm fragments did not spawn, but the 20cm fragments did spawn. The investment to survivorship by the 5cm fragments might have been smaller than that of the 10cm fragments, because the 5cm fragments had smaller energy stocks than did the 10cm fragments. Combined, these results suggest that the energetic investment for regeneration and growth was constant while investment for reproduction was proportional to fragment size. This finding agrees with the theoretical optimal dispersal strategy, in which the allocation to growth by mothers is constant. In conclusion, the colonial coral <I>Acropora muricata</I> generally shows size-independent growth and regeneration, and exhibits a tradeoff among regeneration, growth, survivorship, and reproduction.

      DOI: 10.3755/galaxea.10.83

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    • Embryogenesis in the reef-building coral Acropora spp. 査読有り

      Nami Okubo, Tatsuo Motokawa

      ZOOLOGICAL SCIENCE24 ( 12 ) 1169 - 1175   2007年12月

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      担当区分:筆頭著者, 責任著者   記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:ZOOLOGICAL SOC JAPAN  

      Embryogenesis in the reef building corals Acropora intermedia, A. solitaryensis, A. hyacinthus, A. digitifera, and A. tenuis was studied in detail at the morphological level, and the relationships among the animal pole, blastopore, and mouth were investigated for the first time in corals. These species showed essentially the same sequence of development. The embryo undergoes spiral-like holoblastic cleavage despite the presence of a dense isolecithal yolk. After the morula stage, the embryo enters the "prawn-chip" stage, which consists of an irregularly shaped cellular bilayer. The embryo begins to roll inward to form the bowl stage; the round shape observed during this stage suggests that it may be the beginning of gastrulation. However, the blastopore closes and the stomodeum (mouth and pharynx) is formed via invagination at a site near the closed blastopore. During the planula stage, a concavity forms in the aboral region in conjunction with numerous spirocysts, suggesting that spirocysts are used to attach to the substrate before the onset of metamorphosis.

      DOI: 10.2108/zsj.24.1169

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    • Possible self-fertilization in the brooding coral Acropora (Isopora) brueggemanni 査読有り

      Nami Okubo, Naoko Isomura, Tatsuo Motokawa, Michio Hidaka

      ZOOLOGICAL SCIENCE24 ( 3 ) 277 - 280   2007年3月

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      担当区分:筆頭著者, 責任著者   記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:ZOOLOGICAL SOC JAPAN  

      We examined gametogenesis and the periodicity of planula release in the brooding coral Acropora (Isopora) brueggemanni (Brook, 1893) on Akajima Island, Okinawa, Japan. We captured the moment when A. brueggemanni would be in the process of self-fertilization. Whole colonies of this species were cultured separately or together with other colonies in plastic containers. We observed no apparent periodicity of planula release in the collected colonies. A few planulae were released intermittently during the observation period, regardless of whether the colonies were cultured individually or with other colonies. Serial paraffin sections of A. brueggemanni showed follicle-like cells surrounding the oocyte during vitellogenesis. In September and October, some spermaries looked half-broken and some ova were surrounded by sperm or spermaries instead of follicle-like cells. Such ova were heart-shaped and may have been cells at the first cleavage stage. These observations suggest that the migration of spermaries and/or oocytes resulted in the close proximity of oocytes and sperm, which would allow self-fertilization. This possibility, together with the production of planula larvae by isolated colonies, suggests that this brooding coral engages in self-fertilization.

      DOI: 10.2108/zsj.24.277

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    • When fragmented coral spawn? Effect of size and timing on survivorship and fecundity of fragmentation in Acropora formosa 査読有り

      Nami Okubo, Tatsuo Motokawa, Makoto Omori

      MARINE BIOLOGY151 ( 1 ) 353 - 363   2007年3月

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      担当区分:筆頭著者, 責任著者   記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:SPRINGER  

      In order to determine competency of sexual reproduction and survival rate after fragmentation, the branching coral Acropora formosa was fragmented and fragments in three different sizes (ca. 5, 10 and 20 cm long) and three different stages of gametogenesis were transplanted on coral pavement. Their oocyte development and fecundity, as well as spawning were monitored for a 3-year period. The oocyte development was affected by both fragment size and by the developmental stage of oocytes when fragmented. In small fragments, the oocytes were resorbed while in large fragments they continued development. Oocytes in the early vitellogenic stage at the time of fragmentation were resorbed, whereas those in the late stage continued developing. Smaller fragments showed a lower survival rate and histological observations of their gonads revealed resorption of oocytes, suggesting that there was a trade-off of energy between reproduction and survival. Transplanted fragments often spawned one month earlier than the donor colonies in the first year, but spawning occurred in the same month as the donors or did not occur at all in the second year and none spawned in the third year. The risk of colony death may cause the fragments to re-allocate energy for sexual reproduction.

      DOI: 10.1007/s00227-006-0490-2

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    • Successful methods for transplanting fragments of Acropora formosa and Acropora hyacinthus 査読有り

      N Okubo, H Taniguchi, T Motokawa

      CORAL REEFS24 ( 2 ) 333 - 342   2005年6月

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      担当区分:筆頭著者, 責任著者   記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:SPRINGER  

      In order to establish a successful method for the transplantation of branching and tabular coral fragments, we tested the effects of orientations of attachment, seasons of transplantation, and size of fragments on survival, growth, and spawning using Acropora formosa and A. hyacinthus. Vertically attached, large-sized fragments of A. formosa showed 98-100% survival rate after 18 months. The fragments transplanted in August exhibited better survival than those transplanted in November. The larger fragments had the higher percentage of spawning. The fragments that spawned had lower growth rate, while those resorbed the oocytes carried at the time of transplantation showed higher growth rate, suggesting the trade-off between growth and reproduction. Half of the fragments spawned 1 month earlier than the donor colonies. Only the vertically attached fragments of A. hyacinthus fused to the substratum, and those transplanted in February showed 100% survival rate after 14 months, indicating that this species is well suited for transplantation.

      DOI: 10.1007/s00338-005-0496-0

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    • 世界の造礁サンゴの移植レヴュー 査読有り

      大久保 奈弥, 大森 信

      日本サンゴ礁学会誌2001 ( 3 ) 31 - 40   2001年12月

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      担当区分:筆頭著者, 責任著者   記述言語:日本語   出版者・発行元:日本サンゴ礁学会  

      In order to restore disturbed coral reefs, transplantation of coral fragments or coral heads has been conducted in many parts of the world. We reviewed methods and results of the transplantation experiments described in numerous previous reports in order to determine recommendable methodologies. Problems that should be solved by future studies are discussed. For transplantation, generally, small pieces of coral are taken from the donor colony using hammer, chisel and the like. If the collection site is far from the transplantation site, fragments should be placed in bucket full of seawater. There are various methods to fix the coral fragment onto substrate, e. g. by means of epoxy cement, plastic coated wire and nails. They should be chosen according to size and shape of coral fragments, but we found fixation with nails and cable ties is easy and reliable for staghorn corals. The cost of transplantation with a density of 245, 000 fragments per hectare secured by means of nails and cable ties has been estimated at about 36, 000, 000 JPN Yen. So far, species of the genera &lt;i&gt;Acropora&lt;/i&gt;, &lt;i&gt;Porites&lt;/i&gt;, &lt;i&gt;Pavona&lt;/i&gt; and &lt;i&gt;Galaxea&lt;/i&gt; were most frequently used for transplantation as they have relatively high survival rates.

      DOI: 10.3755/jcrs.2001.31

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    書籍等出版物

    • サンゴは語る

      大久保奈弥

      岩波書店  2021年5月29日 

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    • 和賀江島355

      ( 担当: 編集 ,  範囲: 監修)

      2021年3月 

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      鎌倉市材木座和賀江島の生物リスト

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    • 小坪102

      ( 担当: 共編者(共編著者))

      2017年 

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    • Handbook on the Economics and Management for Sustainable Oceans , UK

      M. Omori, A. Onuma, N. Okubo( 担当: 共著 ,  範囲: A story of the successful application of a comanagement fishing regime in Suruga Bay, Japan.)

      UNEP and Edward Elgar Publishing House  2017年 

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    • Development of underwater techniques for coral reef restoration, Experiment 2. Transplantation of coral fragments: Acropora formosa.

      In: “Manual for restoration and remediation of coral reefs” Edited by M.Omori and S. Fujiwara, Ministry of the Environment, Japan 82pp.  2004年 

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    • Restoration technology using asexual reproduction, Transplantation of coral fragments.

      In: “Manual for restoration and remediation of coral reefs” Edited by M.Omori and S. Fujiwara, Ministry of the Environment, Japan 82pp.  2004年 

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    • Previous research and undertaking of coral reefs restoration.

      In: “Manual for restoration and remediation of coral reefs” Edited by M.Omori and S. Fujiwara, Ministry of the Environment, Japan 82pp.  2004年 

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    • Development of underwater techniques for coral reef restoration, Experiment 2. Transplantation of coral fragments: Acropora formosa.

      In: “Manual for restoration and remediation of coral reefs” Edited by M.Omori and S. Fujiwara, Ministry of the Environment, Japan 82pp.  2004年 

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    • Restoration technology using asexual reproduction, Transplantation of coral fragments.

      In: “Manual for restoration and remediation of coral reefs” Edited by M.Omori and S. Fujiwara, Ministry of the Environment, Japan 82pp.  2004年 

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    • Previous research and undertaking of coral reefs restoration.

      In: “Manual for restoration and remediation of coral reefs” Edited by M.Omori and S. Fujiwara, Ministry of the Environment, Japan 82pp.  2004年 

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    • 枝状ミドリイシAcropora formosaの移植

      サンゴ礁修復に関する技術・手法-現状と展望- 大森 信編著 環境省  2003年 

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    • 分割群体の移植

      サンゴ礁修復に関する技術・手法-現状と展望- 大森 信編著 環境省  2003年 

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    • これまでのサンゴ礁修復研究

      サンゴ礁修復に関する技術・手法-現状と展望- 大森 信編著 環境省  2003年 

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    • 枝状ミドリイシAcropora formosaの移植

      サンゴ礁修復に関する技術・手法-現状と展望- 大森 信編著 環境省  2003年 

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    • 分割群体の移植

      サンゴ礁修復に関する技術・手法-現状と展望- 大森 信編著 環境省  2003年 

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    • これまでのサンゴ礁修復研究

      サンゴ礁修復に関する技術・手法-現状と展望- 大森 信編著 環境省  2003年 

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    所属学協会

    共同研究・競争的資金等の研究

    • 海洋動物の発生胚における微量元素マッピングと環境汚染生物検定への利用

      日本学術振興会  科学研究費助成事業 基盤研究(C) 

      大久保 奈弥

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      2023年4月 - 2026年3月

      課題番号:23K05280

      配分額:4680000円 ( 直接経費:3600000円 、 間接経費:1080000円 )

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    • サンゴの一種をモデル実験動物にするための生活史の解明とゲノム解析

      公益財団法人 大隅基礎科学創成財団  第7期 研究助成 基礎科学(一般) 

      大久保奈弥

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      2023年11月 - 2025年10月

      担当区分:研究代表者 

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    • 現生刺胞動物で発見した盤割様胚の分析からエディアカラ紀胚化石の生物門を探る

      文部科学省 日本学術振興会 科学研究費 挑戦的研究(萌芽) 

      大久保奈弥

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      2020年9月 - 2023年3月

      担当区分:研究代表者 

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    • 白保と竹富のリゾートホテル建設計画地域付近の海域に生息する生物リストの作成

      高木仁三郎市民科学基金 

      大久保奈弥

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      2020年4月 - 2021年3月

      担当区分:研究代表者 

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    • 小さなプラスチックはなぜ細胞から排出されにくいのか

      日本生命財団研究助成 

      大久保 奈弥

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      2019年10月 - 2020年9月

      担当区分:研究代表者  資金種別:競争的資金

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    • 小さなプラスチックはなぜ細胞から排出されにくいのか

      クリタ水・環境科学振興財団 

      大久保 奈弥

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      2019年9月 - 2020年8月

      担当区分:研究代表者  資金種別:競争的資金

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    • マイクロプラスチックが褐虫藻と宿主の共生関係に与える影響

      日本学術振興会  科学研究費助成事業 

      大久保 奈弥

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      2017年4月 - 2020年3月

      課題番号:17K07890

      配分額:4810000円 ( 直接経費:3700000円 、 間接経費:1110000円 )

      海洋生態系において重要な役割を担うサンゴと褐虫藻の共生関係がマイクロプラスチックにより阻害されることを、サンゴとそのモデル生物であるイソギンチャクを用いた実験により世界で初めて発見しました。多くのサンゴにとって、褐虫藻が体の中に共生することは生き残るための必須条件です。マイクロプラスチックが海洋生物の相互関係(共生)を阻害するという知見はこれまでになく、世界中で危機に瀕するサンゴへの被害や、また、海洋で共生関係を維持するその他の生物への影響も懸念されます。

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    • マイクロプラスチックがサンゴに与える影響

      日本学術振興会 科学研究費 基盤C 

      大久保奈弥

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      2017年4月 - 2020年3月

      担当区分:研究代表者  資金種別:競争的資金

      配分額:4800000円

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    • 開発の危機に晒される相模湾沿岸域に生息する動植物の生物目録作成

      旭硝子財団 環境フィールド研究 近藤次郎グラント 

      大久保奈弥

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      2017年 - 2020年

      担当区分:研究代表者  資金種別:競争的資金

      配分額:4000000円

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    • ナノ・ミクロスケールの粒子がサンゴに与える影響

      日本生命財団 

      大久保奈弥

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      2016年

      担当区分:研究代表者  資金種別:競争的資金

      配分額:1300000円

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    • オリンピックの開催で開発が予定されている神奈川県逗子市小坪大崎の藻場およびそこに生息する動植物の調査

      高木仁三郎市民科学基金 

      大久保奈弥

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      2016年

      担当区分:研究代表者  資金種別:競争的資金

      配分額:500000円

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    • サンゴにおける2つの新亜目の設立:発生様式はサンゴの分類形質となりうるか

      日本学術振興会 科学研究費 若手B 

      大久保奈弥

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      2015年

      担当区分:研究代表者  資金種別:競争的資金

      配分額:4290000円

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    • サンゴにおける2つの新亜目の設立:発生様式はサンゴの分類形質となりうるか

      無脊椎動物財団 

      大久保奈弥

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      2015年

      担当区分:研究代表者  資金種別:競争的資金

      配分額:700000円

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    • 河川や海洋においてナノ・ミクロスケールの粒子が各栄養段階の水棲生物に与える影響

      クリタ水・環境科学振興財団 

      大久保奈弥

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      2015年

      担当区分:研究代表者  資金種別:競争的資金

      配分額:1000000円

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    • 骨の形成に関連する遺伝子をマーカーに用いたサンゴ礁のリスク管理

      日本学術振興会 科学研究費 若手B 

      大久保奈弥

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      2012年

      担当区分:研究代表者  資金種別:競争的資金

      配分額:4810000円

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    • サンゴの種多様性維持を目的としたキクメイシ科サンゴ種苗生産技術の確立

      日本学術振興会 優秀若手研究者海外派遣事業 

      大久保奈弥

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      2009年

      担当区分:研究代表者  資金種別:競争的資金

      配分額:2044000円

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    • サンゴの種多様性維持を目的としたキクメイシ科サンゴ種苗生産技術の確立

      日本学術振興会 特別研究員奨励費 

      大久保奈弥

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      2008年

      担当区分:研究代表者  資金種別:競争的資金

      配分額:2400000円

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    • サンゴの保全を目的としたキクメイシ科サンゴの発生様式に関する研究

      笹川科学研究助成金 

      大久保奈弥

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      2007年

      担当区分:研究代表者  資金種別:競争的資金

      配分額:550000円

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    • Reproductive biology, Embryology, and Ecology of coral

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      資金種別:競争的資金

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